View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17664_low_18 (Length: 296)

Name: NF17664_low_18
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17664_low_18
NF17664_low_18
[»] chr8 (2 HSPs)
chr8 (202-273)||(8754138-8754209)
chr8 (220-273)||(10507236-10507289)
[»] chr6 (8 HSPs)
chr6 (39-83)||(13898039-13898083)
chr6 (39-83)||(13474836-13474880)
chr6 (215-263)||(14081904-14081952)
chr6 (202-268)||(13475058-13475124)
chr6 (157-204)||(14081978-14082025)
chr6 (32-83)||(14082785-14082836)
chr6 (34-79)||(13894977-13895022)
chr6 (163-204)||(13475001-13475042)


Alignment Details
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 8754209 - 8754138
Alignment:
Q  202 tatttctggaaagtagtcagtgagaactcattcaccaacagaaacatgacttcactgaattttttactgtaa 273  Q
    |||||||| ||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  8754209 tatttctgcaaactagtcagtgggaactcattcatcaacaaaaacatgacttcactgaattttttgctgtaa 8754138  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 10507236 - 10507289
Alignment:
Q  220 agtgagaactcattcaccaacagaaacatgacttcactgaattttttactgtaa 273  Q
    |||| ||||||||||| ||||  |||||||| ||||||||||||||||||||||    
T  10507236 agtgggaactcattcatcaacgaaaacatgatttcactgaattttttactgtaa 10507289  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 13898039 - 13898083
Alignment:
Q  39 ttacctcaggaatgacagaaagaacaggaagaatgtcttgaatgg 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13898039 ttacctcaggaatgacagaaagaacaggaagaatgtcttgaatgg 13898083  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 13474836 - 13474880
Alignment:
Q  39 ttacctcaggaatgacagaaagaacaggaagaatgtcttgaatgg 83  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  13474836 ttacctcaggaatgacagaaagaacaagaagaatgtcttgaatgg 13474880  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 14081952 - 14081904
Alignment:
Q  215 tagtcagtgagaactcattcaccaacagaaacatgacttcactgaattt 263  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  14081952 tagtcagtgagaactcattcatcaacagaaacatgacttcattgaattt 14081904  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 13475058 - 13475124
Alignment:
Q  202 tatttctggaaagtagtcagtgagaactcattcaccaacagaaacatgacttcactgaattttttac 268  Q
    |||||||| ||||||||||||| ||||| ||||| || | |||| ||||||||||||||||||||||    
T  13475058 tatttctgcaaagtagtcagtgtgaacttattcatcatcggaaaaatgacttcactgaattttttac 13475124  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 14082025 - 14081978
Alignment:
Q  157 caatgcaatgacattcagatatttctacgcctgctcttatagcgttat 204  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  14082025 caatgcaatgacactcagatatttctacgcctgcagttatagcgttat 14081978  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 14082836 - 14082785
Alignment:
Q  32 catagacttacctcaggaatgacagaaagaacaggaagaatgtcttgaatgg 83  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||| |||||    
T  14082836 catagatttaccacaggaatgagagaaagaacaggaagaatgtcttaaatgg 14082785  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 13894977 - 13895022
Alignment:
Q  34 tagacttacctcaggaatgacagaaagaacaggaagaatgtcttga 79  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||    
T  13894977 tagatttacctcaggaatggcagaaagaacgggaagaatgtcttga 13895022  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 13475001 - 13475042
Alignment:
Q  163 aatgacattcagatatttctacgcctgctcttatagcgttat 204  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||    
T  13475001 aatgacattcagatattgctatgcctgctgttatagcgttat 13475042  T

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