View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17664_low_2 (Length: 556)

Name: NF17664_low_2
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17664_low_2
NF17664_low_2
[»] chr7 (1 HSPs)
chr7 (34-540)||(3416633-3417145)
[»] chr2 (4 HSPs)
chr2 (241-540)||(13440983-13441282)
chr2 (241-540)||(13449146-13449445)
chr2 (301-540)||(13462227-13462466)
chr2 (235-293)||(13455611-13455669)
[»] chr5 (4 HSPs)
chr5 (34-448)||(12541249-12541675)
chr5 (220-540)||(28386099-28386410)
chr5 (492-540)||(12541707-12541755)
chr5 (34-88)||(28385898-28385952)
[»] chr8 (1 HSPs)
chr8 (356-540)||(12640584-12640768)
[»] chr4 (2 HSPs)
chr4 (372-540)||(48959055-48959223)
chr4 (241-540)||(48963065-48963365)
[»] chr6 (2 HSPs)
chr6 (493-540)||(12482558-12482605)
chr6 (497-540)||(12589290-12589333)


Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 34 - 540
Target Start/End: Complemental strand, 3417145 - 3416633
Alignment:
Q  34 gtgtcaagcatcagtcctatgaatttactgagaacctttggtggttcactgcacatggtgataggaagaggaaagtttggaacgacataggaacttgaat 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3417145 gtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacatggtgataggaagaggaaagtttggaacgatataggaacttgaat 3417046  T
Q  134 c------agaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagactggaaagacagacaaaacattgtatgtgaaattagggatttg 227  Q
    |      ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  3417045 ccgaatcagaatccgtaaaaagtaaattatttgttctaagggattccatgagcaagactggaaaaacggacaaaacattgtatgtgaaattagggatttg 3416946  T
Q  228 aaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggagg 327  Q
    |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3416945 aagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggagg 3416846  T
Q  328 agcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaaggggaagt 427  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3416845 agcattgcgccattgttgatcttccaagtggtgacgaggtcggtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaagggaaagt 3416746  T
Q  428 cgacggtgtgaaggctgaggaagaagggagcggcataagatagagattttgtaaggaatttggaattggagggagtggtgatgattgtgacatgttggcc 527  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  3416745 cgacggtgtgaaggcggaggaagaagggagcggcataagaaagagattttgtaagaaatttggcattggagggagtggtgatgattgtgacatgttggcc 3416646  T
Q  528 acgggatgcaaac 540  Q
    | |||||||||||    
T  3416645 atgggatgcaaac 3416633  T

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Target: chr2 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 241 - 540
Target Start/End: Original strand, 13440983 - 13441282
Alignment:
Q  241 aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgccat 340  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |  |||||||||||||||| || |||||||||||||||||||     
T  13440983 aagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccac 13441082  T
Q  341 tgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaag 440  Q
     || ||||||||||| ||| | |  |||||||||||| || |||||||||||||||||||||||||| | ||||||  |||| |||||||||||||| |     
T  13441083 ggtggatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaa 13441182  T
Q  441 gctgaggaagaagggagcggcataagatagagattttgtaaggaatttggaattggagggagtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
    || ||||||||||| ||| ||  | || |||||||| || ||| |||  |  |||||||||||||||||||||||||| |||||||||||||||||||||    
T  13441183 gcggaggaagaaggaagccgcggatgagagagatttggttagggattgagcgttggagggagtggtgatgattgtgacttgttggccacgggatgcaaac 13441282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 241 - 540
Target Start/End: Original strand, 13449146 - 13449445
Alignment:
Q  241 aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgccat 340  Q
    |||||||||||||||||||| |  |||||||||||||||||||| |||||||| || | |||||||||| |||| |||   |  |||||||| ||||||     
T  13449146 aagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggttctttaaggagcatcgcgccag 13449245  T
Q  341 tgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaag 440  Q
    | | ||||||||||||||||    |||| || || || || ||||||||||| |||||||||||| | | ||||||  |||||||||| |||||||||||    
T  13449246 tatggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgttgggaggggaagtcaacggtgtgaag 13449345  T
Q  441 gctgaggaagaagggagcggcataagatagagattttgtaaggaatttggaattggagggagtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
     |  |||||  | |||||| |  | || |||||||| |||||| |||| |  |||| |||||||||||||| ||| || || ||||||||||||||||||    
T  13449346 acgaaggaatgaaggagcgtcggatgagagagatttggtaagggattttgcgttggcgggagtggtgatgactgttacttgctggccacgggatgcaaac 13449445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 301 - 540
Target Start/End: Original strand, 13462227 - 13462466
Alignment:
Q  301 atgaaatcctcaatgggtcgatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcag 400  Q
    ||||||||||||||||||| ||||||||||||||||||||  | |||||||||||  |||     ||| |||||||| || |||||||||||||| ||||    
T  13462227 atgaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcag 13462326  T
Q  401 ggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaagaagggagcggcataagatagagattttgtaaggaatttggaattggaggg 500  Q
    | ||| | | ||||||  ||||||| |||| |||||||| ||  |||| | ||||||||||  | || |||||||| |||||| ||| |   ||||||||    
T  13462327 gaaggccaacttgttgggaggggaattcgatggtgtgaaagcgaaggagggagggagcggcggatgagagagatttggtaagggattggacgttggaggg 13462426  T
Q  501 agtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  13462427 agtggtgatgactgtgacgtgttggccacgggatgcaaac 13462466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 13455611 - 13455669
Alignment:
Q  235 tgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatc 293  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  13455611 tgggccaagtcattaacccatgggtatgcagcgtcggagatgatacaatctgggggatc 13455669  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 34 - 448
Target Start/End: Original strand, 12541249 - 12541675
Alignment:
Q  34 gtgtcaagcatcagtcctatgaatttactgagaacctttggtggttcactgcacatggtgataggaagaggaaagtttggaacgacataggaactt---- 129  Q
    ||||||||||||| |||||||||||| |||||||||||||  |||| |||||||||||||||| || ||||||| |||||||||||||| ||||||        
T  12541249 gtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtgatacgatgaggaaaatttggaacgacatacgaacttgaat 12541348  T
Q  130 --------gaatcagaatccgtaaaaagtaaattatttgttctaagcgattccatgagcaagactggaaagacagacaaaacattgtatgtgaaattagg 221  Q
            ||||||||||  |||  ||| ||||| ||| ||||||| |||||||||||  |||| | ||| | |||  |  ||||| |||||||||| ||    
T  12541349 ccgaatcagaatcagaattggtatgaagcaaattgttttttctaagggattccatgagggagacagcaaaaagagaggatccattgaatgtgaaattggg 12541448  T
Q  222 gatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcga 321  Q
     | ||| ||  |  | || ||||||||| |||||| ||| | ||||||||  ||||||||||| |||||||  ||   ||  ||||| |||||||||| |    
T  12541449 tacttgtagcttacgagccaagtcattaccccatgagtaagaagagtcggcaatgatacaatcaggtggattattcacaacaaaatcatcaatgggtcca 12541548  T
Q  322 tggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaagg 421  Q
    |||||||||||||| |||||||  || ||||||| ||| |   |||||||||||||||| |||||||||||||||| ||||||||| | |||||   |||    
T  12541549 tggaggagcattgcaccattgtgaattttccaagaggtaatggggtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggagg 12541648  T
Q  422 ggaagtcgacggtgtgaaggctgagga 448  Q
    |||||||||| ||||||||| ||||||    
T  12541649 ggaagtcgacagtgtgaagggtgagga 12541675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 220 - 540
Target Start/End: Original strand, 28386099 - 28386410
Alignment:
Q  220 gggatttgaaggctctgggctaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtc 319  Q
    |||||||||||  | ||||| ||||||||| |||||| | |||| ||||| |  || |||||||| |||||||  || | || ||||||| |||  | |     
T  28386099 gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggattcttctcaacgaaatccccaaccgctt 28386198  T
Q  320 gatggaggagcattgcgccattgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaa 419  Q
     || |||||||||||||||||| | ||||||||||||||||| | |||||||||||||||  ||||| |||| ||||| ||||||||| | ||||||| |    
T  28386199 cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata 28386298  T
Q  420 ggggaagtcgacggtgtgaaggctgaggaagaagggagcggcataagatagagattttgtaaggaatttggaattggagggagtggtgatgattgtgaca 519  Q
    |||||| || ||||||||||||| ||||         |||||| | || |||| ||| |||||| ||| || ||||||||||||||||||||||||||||    
T  28386299 ggggaattcaacggtgtgaaggcggagg---------gcggcagatgagagagttttagtaagggattgggcattggagggagtggtgatgattgtgaca 28386389  T
Q  520 tgttggccacgggatgcaaac 540  Q
    ||||||||||| |||||||||    
T  28386390 tgttggccacgtgatgcaaac 28386410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 492 - 540
Target Start/End: Original strand, 12541707 - 12541755
Alignment:
Q  492 attggagggagtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  12541707 attggagggagtggtgatgattgtgacttgttggccatgtgatgcaaac 12541755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 28385898 - 28385952
Alignment:
Q  34 gtgtcaagcatcagtcctatgaatttactgagaacctttggtggttcactgcaca 88  Q
    ||||||||||||| |||||||||  | ||||||||||||||||||| ||| ||||    
T  28385898 gtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacaca 28385952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 356 - 540
Target Start/End: Complemental strand, 12640768 - 12640584
Alignment:
Q  356 tggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaagaaggg 455  Q
    ||||| || ||| |||||||||||| |  ||||||| ||| || || || || | ||||||  |||||||||||||||||||||||| |||||| || ||    
T  12640768 tggtgtcagggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacgg 12640669  T
Q  456 agcggcataagatagagattttgtaaggaatttggaattggagggagtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
    | || |  | || |||||||| |||| ||| | ||  |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  12640668 atcgacgaaggagagagatttggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgttggccatgggatgcaaac 12640584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 372 - 540
Target Start/End: Original strand, 48959055 - 48959223
Alignment:
Q  372 ggtggaggatatagattcaatgccttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaaggctgaggaagaagggagcggcataagataga 471  Q
    ||||||||| |||||||||| ||| ||||||||| | | ||||||  |||| |||| |||   |||||||| ||||||||||||| |  ||   || |||    
T  48959055 ggtggaggacatagattcaacgccgtcagggaggccaacttgttgggagggaaagttgacaaggtgaaggcggaggaagaagggatcaacacttgagaga 48959154  T
Q  472 gattttgtaaggaatttggaattggagggagtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
    ||||| |||| ||| | ||| ||||||||||||||||||||||| || ||||||||| |||||||||||    
T  48959155 gatttggtaaagaagtgggagttggagggagtggtgatgattgtcacttgttggccatgggatgcaaac 48959223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 540
Target Start/End: Original strand, 48963065 - 48963365
Alignment:
Q  241 aagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtcgatggaggagcattgcgccat 340  Q
    ||||||| |||||||||||||  | |||||| |||||| || || |||||||| || |  |||||||||| ||| ||||  ||||||||||||||||| |    
T  48963065 aagtcataaacccatgggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgt 48963164  T
Q  341 tgttgatcttccaagtggtgacaaggtcagtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaaggggaagtcgacggtgtgaag 440  Q
     ||  |||||    | |||| | | ||||||||||||||| | ||||||||  || ||| |||||  |  |||||   |||||||||||| ||| |||||    
T  48963165 agtatatcttggctgaggtggcgatgtcagtggtggaggacaaagattcaacaccatcaaggagg--ctgttgtttggaggggaagtcgatggtatgaag 48963262  T
Q  441 gctgaggaagaagggagcggcataagatagagatttt---gtaaggaatttggaattggagggagtggtgatgattgtgacatgttggccacgggatgca 537  Q
    ||  ||||||| |||| ||||| | ||  |||| ||    || | ||| | ||  |||||||||||||||||||||||||| |||||||||||||| |||    
T  48963263 gcgaaggaagaggggatcggcaaaggaaggagacttattggtgaagaagtgggcgttggagggagtggtgatgattgtgacttgttggccacgggacgca 48963362  T
Q  538 aac 540  Q
    |||    
T  48963363 aac 48963365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 540
Target Start/End: Complemental strand, 12482605 - 12482558
Alignment:
Q  493 ttggagggagtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  12482605 ttggaaggagtggtgatgattgtgacatgatggccacgtgatgcaaac 12482558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 540
Target Start/End: Complemental strand, 12589333 - 12589290
Alignment:
Q  497 agggagtggtgatgattgtgacatgttggccacgggatgcaaac 540  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  12589333 agggagtggtggtgattgtgacttgttggccacgggatgcaaac 12589290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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