View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_25 (Length: 245)
Name: NF17664_low_25
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 44137939 - 44137732
Alignment:
| Q |
17 |
aatataggggtggacaaagttgtttttcgaatggaaagatattgctttaattaaagttagacccactagttgcacccaaagaaaaaagctacaccttctt |
116 |
Q |
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| T |
44137939 |
aatataggggtggacaaagttgtttt-cgaatggaaagatattgctttaattaaagttagacccactagttgcacccaaagaaaaaagctacaccttctt |
44137841 |
T |
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| Q |
117 |
aaggattcatactcaaccaaaaaatgattaacagtgaggtttcataattatccctcattcacggagtttaattggcctacccaagatcttgttgttatga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44137840 |
aaggattcatactcaaccaaaaaatgattaacagtgaggtttcataattatccctcattcacggagtttaattggcctacccaagattttgttgttatga |
44137741 |
T |
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| Q |
217 |
taatgacgt |
225 |
Q |
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||||||||| |
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| T |
44137740 |
taatgacgt |
44137732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 50058174 - 50057967
Alignment:
| Q |
17 |
aatataggggtggacaaagttgtttttcgaatggaaagatattgctttaattaaagttagacccactagttgcacccaaagaaaaaagctacaccttctt |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
50058174 |
aatataggggtggacaaagttgtttt-cgaatggaaagatattactttaattaaagttagacccattagttggacccaaagaaaaaagctagaccttctt |
50058076 |
T |
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| Q |
117 |
aaggattcatactcaaccaaaaaatgattaacagtgaggtttcataattatccctcattcacggagtttaattggcctacccaagatcttgttgttatga |
216 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
50058075 |
aaggactcatactcaaccaaaaaatgagtaacagtgaggttttgtaattatccctcattcacggagtttaattggcctacccaagatcttgttgttttga |
50057976 |
T |
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| Q |
217 |
taatgacgt |
225 |
Q |
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||||||||| |
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| T |
50057975 |
taatgacgt |
50057967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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