View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_26 (Length: 238)
Name: NF17664_low_26
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 40841915 - 40841806
Alignment:
| Q |
113 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40841915 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
40841816 |
T |
|
| Q |
213 |
acctctttgt |
222 |
Q |
| |
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|||||||||| |
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| T |
40841815 |
acctctttgt |
40841806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 41958833 - 41958724
Alignment:
| Q |
113 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41958833 |
tattttctatgttcacgaaaattattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
41958734 |
T |
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| Q |
213 |
acctctttgt |
222 |
Q |
| |
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|||||||||| |
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| T |
41958733 |
acctctttgt |
41958724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 41958988 - 41958877
Alignment:
| Q |
1 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttt |
100 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
41958988 |
cttcctttgttcaattacaattttgattacag--------tattcaattacctgtctcattataattatgatcaacatctccttaatttcctcctctttt |
41958897 |
T |
|
| Q |
101 |
tccctcgacccctattttct |
120 |
Q |
| |
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|||||||||||||||||||| |
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| T |
41958896 |
tccctcgacccctattttct |
41958877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40842174 - 40842107
Alignment:
| Q |
1 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40842174 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagtta |
40842107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 40842013 - 40841959
Alignment:
| Q |
66 |
ttatgatcaacatctccttaatttcatcctctttttccctcgacccctattttct |
120 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40842013 |
ttataatcaacatctccttaatttcctcctctttttccctcgacccctattttct |
40841959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 29587313 - 29587422
Alignment:
| Q |
113 |
tattttctatgttcacgaaagttattttctgccgtgaacaaacactagaaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
29587313 |
tattttctatgttcacgaaagttattttctgccgtgagcaaccactagaaatcatgccactccctcacattcataccaaccccttatgttgtaatagtaa |
29587412 |
T |
|
| Q |
213 |
acctctttgt |
222 |
Q |
| |
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|||||||||| |
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|
| T |
29587413 |
acctctttgt |
29587422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 9992936 - 9993047
Alignment:
| Q |
1 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
9992936 |
cttcctttgttcaattacaattttgattacag--------tattcaattacttgtctcattataattataatcaacatctccttaatttcctcctctttt |
9993027 |
T |
|
| Q |
101 |
tccctcgacccctattttct |
120 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
9993028 |
tccctcgacccctattttct |
9993047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29587158 - 29587269
Alignment:
| Q |
1 |
cttcctttgttcaattacaattttgattatagatttatagtattcaattacttgtctcattatagttatgatcaacatctccttaatttcatcctctttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
29587158 |
cttcctttgttcaattacaattttgattacaa--------tattcaattacttgtctcattataattatgatcaacttctccttaatttcctcctctttt |
29587249 |
T |
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| Q |
101 |
tccctcgacccctattttct |
120 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
29587250 |
tccctcgacccctattttct |
29587269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 9993078 - 9993139
Alignment:
| Q |
161 |
aaatcacgccactccctcacattcataccaaccccttgtgttctaatagtaaacctctttgt |
222 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
9993078 |
aaatcacgccactccctcacattcataacaaccccttgtgttctgatagtaaacctctttgt |
9993139 |
T |
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