View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_28 (Length: 223)
Name: NF17664_low_28
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_28 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 34925403 - 34925199
Alignment:
| Q |
19 |
gtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttata |
118 |
Q |
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| T |
34925403 |
gtaacatcaaaagtaagcggcagaagaagcaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttata |
34925304 |
T |
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| Q |
119 |
ggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtg |
218 |
Q |
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| T |
34925303 |
ggagtaggtgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtg |
34925204 |
T |
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| Q |
219 |
ataac |
223 |
Q |
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||||| |
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| T |
34925203 |
ataac |
34925199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 34935305 - 34935111
Alignment:
| Q |
19 |
gtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
34935305 |
gtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatctatatgttagacttcttatatagaatatttata |
34935206 |
T |
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| Q |
119 |
ggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggaggg |
216 |
Q |
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| T |
34935205 |
ggagtaggtgcttaaataaatcattctcaatgctgtgactaaaattaaacta---ttagttttatcctaaagttgcgagcattagacacttgggaggg |
34935111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 34929765 - 34929571
Alignment:
| Q |
19 |
gtaacatcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggacatccaaaatttatatgttagacttcttataaagaatatttata |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
34929765 |
gtaacatcaaaagtaagcggcagaagaagtaagtgctggaggcttaagatgaaggacatccaaaatctatatgtttgacttcttatatagaatatttata |
34929666 |
T |
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| Q |
119 |
ggagtaggcgcttacataaatcattctaaatgctgtaactaaaattaaactatgtttagttttatcatgaagttgtgagtgttagacacttgggaggg |
216 |
Q |
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|||||||| ||||| |||||||||||| ||| |||| ||||||||||||||| ||||||||||| | |||||| ||| ||||||||||||||||| |
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| T |
34929665 |
ggagtaggtgcttaaataaatcattctcaattctgtgactaaaattaaacta---ttagttttatcctaaagttgcgagcattagacacttgggaggg |
34929571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 34928645 - 34928592
Alignment:
| Q |
23 |
catcaaaagtaagcggcagaagaagtaagtgttggaggcttaagatgaaggaca |
76 |
Q |
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| T |
34928645 |
catcagaagtaagcggcagaagaagcacgtgttggaggcttaagatgaaggaca |
34928592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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