View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_5 (Length: 440)
Name: NF17664_low_5
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Original strand, 31003597 - 31004017
Alignment:
| Q |
14 |
ttatgtgcataaacactagaattttataggctggaaaatggtggccaccaactcggaaaatcagaacagttatgatcaccgcgaactcttcatgtaccac |
113 |
Q |
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| T |
31003597 |
ttatgtgcataaacactagaattttataggctggaaaatggtgtccaccaactcggaaaatcagagtagttacgatcaccgcgaactcttcatgtaccac |
31003696 |
T |
|
| Q |
114 |
caatcacgatccacaaacgagtcatgtgcgtgaacactagagttttatagtctgagacgtgtgataatcgtcaaaattcaacaaaactcttcaacacagt |
213 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31003697 |
caatcatgatccacaaacgagtcatgtgcgtgaacactagagttttatagtctgagacgtgtgataatcgtcaaaattcaacaaaactcttcaacacagt |
31003796 |
T |
|
| Q |
214 |
tccctcgtgcgctaatgaataatgctcatctagtgtgtgaccttaatggtctgataaaagtaatataatagagacaaataaatcatagataaactcggtt |
313 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31003797 |
tccctcgtgtgctaatgaataatgctcatctagtgtgcgaccctaatggtctgataaaagtaatataatagagacaaataaatcatagataaactcgatt |
31003896 |
T |
|
| Q |
314 |
accaatttaaaatttggattggttctaactcataccctacaaatcagttttattaaatccttnnnnnnntgggtttttattaaagttgacttatagaaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31003897 |
accaatttaaaatttggattggttctaactcataccctacaaatcagttttattaaatccttaaaaaaatgggtttttattaaagttgacttatagaaag |
31003996 |
T |
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| Q |
414 |
atattgagggagtataattta |
434 |
Q |
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|||| |||||||||||||||| |
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| T |
31003997 |
atatcgagggagtataattta |
31004017 |
T |
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