View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_6 (Length: 437)
Name: NF17664_low_6
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 282 - 423
Target Start/End: Complemental strand, 32715264 - 32715123
Alignment:
| Q |
282 |
ggataaaccttacagatatttgcttaattcccaaggtttaggatctgcaattcgtgaatcaatttagacccatttcattatgtaactctactttatcatg |
381 |
Q |
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| T |
32715264 |
ggataaaccttacagatatttgcttaattcccaaggtttaggatctgcaattcgtgaatcaatttagacccatttcattttgtaactctactttatcatg |
32715165 |
T |
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| Q |
382 |
taacttaatagaatgaaggattgcattgctactattgtatct |
423 |
Q |
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| T |
32715164 |
taacttaatagaatgaaggattgcattgctactattgtatct |
32715123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 32715775 - 32715596
Alignment:
| Q |
91 |
tgctaacttaaatgttgtgaagcttttccttnnnnnnnnnnnntgctgtgaagttttaagcttgcaaatacattgaatttaaatgttcctctttttcttc |
190 |
Q |
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| T |
32715775 |
tgctaacttaaatgttgtgaagcttttccttaaaaaaaaaa--tgctgtgaagttttaagcttgcaaatgcattgaatttaaatgttcctctttttcttc |
32715678 |
T |
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| Q |
191 |
ccaattcccaacatgcagaaattaattggaacagttacaaatctcacggaaattcagcagaaaatctaagaaaaacaattag |
272 |
Q |
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| T |
32715677 |
ccaatgcccaacatgcagaaattaattggaacagttacaaatctcacggaaattcagccgaaaatctaggaaaaacaattag |
32715596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 32715887 - 32715836
Alignment:
| Q |
10 |
aatatactgttgatcatcgtagaataacgaaaagcacttatcacaacctgct |
61 |
Q |
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| T |
32715887 |
aatatactgttgatcatcgtagaataacgaaaagcacttatcacaacctgct |
32715836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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