View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_7 (Length: 419)
Name: NF17664_low_7
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 3453839 - 3454230
Alignment:
| Q |
18 |
aataatttgtcaaatgaaaatgctttggcggaagagtttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctg |
117 |
Q |
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| T |
3453839 |
aataatttgtcaaatgaaaatgctttggcggaagagtttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctg |
3453938 |
T |
|
| Q |
118 |
cactaacttgcatgtaccttctaaataaagtaggtatagccttttctgtgtgacattacaacatgagaaagnnnnnnnttaagtacacttgctaaacaaa |
217 |
Q |
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| T |
3453939 |
cactaacttgcatgtaccttctaaataaagtaggtatagccttttctgtgtgacattacaacatgaaaaagaaaaaaattaagtacacttgctaaacaaa |
3454038 |
T |
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| Q |
218 |
aatcaaatttcactatatgaattcaaaatataatcaattctaaaacaaaag-aaggaacgctgttactaacacatacctggtatgccaattcctgtgtcg |
316 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3454039 |
aatcaaatttcactatatgaatacaaaatataatcaattctaaaacaaaagaaaagaacgctgttactaacacatacctggtatgccaattcctgtgtcg |
3454138 |
T |
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| Q |
317 |
tacacatcacaacgtatccacactgttgtttcaattgaatgagtttgttcttcagt---gtcatcattcattgagcattcactgttaactga |
405 |
Q |
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| T |
3454139 |
tacacatcacaacgtatccacactgttgtttcaattgaatgagtttgttcttcagtatcatcatcattcattgagcattcactgttaactga |
3454230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 48696756 - 48696644
Alignment:
| Q |
54 |
tttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcactaacttgcatgtaccttctaaataaagtaggta |
153 |
Q |
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| T |
48696756 |
tttaccagttgtttgcatattgctagtcctagccctgtcccaccatactttcgagcgtgatctacactgacttgcatgtaccttttgaataaactatgta |
48696657 |
T |
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| Q |
154 |
tagccttttctgt |
166 |
Q |
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| || |||||||| |
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| T |
48696656 |
ttgcattttctgt |
48696644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 402
Target Start/End: Complemental strand, 48696489 - 48696377
Alignment:
| Q |
290 |
atacctggtatgccaattcctgtgtcgtacacatcacaacgtatccacactgttgtttcaattgaatgagtttgttcttcagtgtcatcattcattgagc |
389 |
Q |
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| T |
48696489 |
atacctggtattccaatgcctgtatcatatacatcacaacctatccacactgttgtttcatttgagtgatgttgatcctctgtgtctccgttcatcgagc |
48696390 |
T |
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| Q |
390 |
attcactgttaac |
402 |
Q |
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||||||| ||||| |
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| T |
48696389 |
attcactcttaac |
48696377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 24626792 - 24626877
Alignment:
| Q |
52 |
agtttaccagttgtttacatattgctagtcctagacctgtgcctccatattttcgagcatggtctgcactaacttgcatgtacctt |
137 |
Q |
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||||||| ||||||| ||||||||||||||||||| ||| ||||| | ||| |||| || ||| ||| |||||||||||||||| |
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| T |
24626792 |
agtttactggttgtttgcatattgctagtcctagacttgtctctccaaacttttgagcgtgatctacaccaacttgcatgtacctt |
24626877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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