View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_8 (Length: 406)
Name: NF17664_low_8
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 107 - 392
Target Start/End: Original strand, 49116492 - 49116777
Alignment:
| Q |
107 |
caaacctccaaagtttttaactgattgtttttagtgcaagtttcatccatattcacataaacaatgttaacgtatgtgacatttgatatgtaatcaatca |
206 |
Q |
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| T |
49116492 |
caaacctccaaagtttttaactgattgtttttagtgcaagtttcatccatattcacataaacaatgttaacttatgtgacttttgatatgtaatcaatca |
49116591 |
T |
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| Q |
207 |
atcgttgcaccattcgatcatcttccccaaaaatcaaccagttttcttcaatctaaaacaaaaatatccaccaattgaatatcatcttcattctcatata |
306 |
Q |
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| T |
49116592 |
atcgttgcaccattcgatcatcttccccaaaaatcaaccagttttcttcaatctaaaacaaaaatatccaccaattgaatatcatcttcattctcatata |
49116691 |
T |
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| Q |
307 |
tccataaaactcgacaaaaaccatgacaattgtggttcaaatgtttatgttggtgtcaagaaatggttgctcataggaccaacatg |
392 |
Q |
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| T |
49116692 |
tccataaaactcgacaaaaaccatgacaattgtggttcaaatgtttatgttggtgtcaagaaatggttgctcataggaccaacatg |
49116777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 49116303 - 49116365
Alignment:
| Q |
28 |
tttgtaatggaagagttttgaacttctttttatagacaagtgttatcataagttatgttagta |
90 |
Q |
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| T |
49116303 |
tttgcaatggaagagttttgaacttctttttatagacaagtgttatcataagttatgttagta |
49116365 |
T |
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