View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_9 (Length: 380)
Name: NF17664_low_9
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 45866781 - 45867132
Alignment:
| Q |
11 |
cacagaaagcaaaataagaagtatacttattttgtttttaaggctccacgagagcacttgatgccccgttggtttcatggaaaatatcttctcagttgcc |
110 |
Q |
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| T |
45866781 |
cacagaaagcaaaataagaagtatacttattttctttttaaggctccacgagagcacttgatgccccgttggtttcatggaaaatatcttctcagttgcc |
45866880 |
T |
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| Q |
111 |
agcatttggtgcacaactcaagaaataactttttcataatatttagttgatccacaaaaatctacctaccaatagaacacaatagaatagctaacaaaaa |
210 |
Q |
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| T |
45866881 |
agcatttggtgcacaactcaagaaataactttttcataatatttagttgatccacaaaaatctacctaccaatagaacacaatagaatagctaacaaaaa |
45866980 |
T |
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| Q |
211 |
agaggaaaccgatgcatcaaatacactaaagagtgaattttacacaccaaggtaacacaccgatgagttgtgcctttagtgaggtgcacacatgtgcaaa |
310 |
Q |
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| T |
45866981 |
agaggaaaccgatgcatcaaatacactaaagagtgaatttaacacaccaaggtaacacaccgatgagttgtgcctttagtgaggtgcatacatgtgcaca |
45867080 |
T |
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| Q |
311 |
cctctttagagtgtgtttggacgagggaatgcaattttttgagagaattcag |
362 |
Q |
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| T |
45867081 |
cctctttagagtgtgtttggacgagggaatgcaattttttgagagaattcag |
45867132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 17403308 - 17403261
Alignment:
| Q |
78 |
gttggtttcatggaaaatatcttctcagttgccagcatttggtgcaca |
125 |
Q |
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| T |
17403308 |
gttgatttcatggaaaatatcttctcagttgccagcatttggtgcaca |
17403261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 4056228 - 4056307
Alignment:
| Q |
164 |
acaaaaatctacctaccaatagaacacaatagaatagctaacaaaaaagaggaaaccgatgcatcaaatacactaaagag |
243 |
Q |
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|||||| ||||||||||||||||| || |||||| ||| |||| ||| ||||||||||| |||||||||||| |||||| |
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| T |
4056228 |
acaaaattctacctaccaatagaataccatagaagagccaacagaaacgaggaaaccgacacatcaaatacaccaaagag |
4056307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 35491167 - 35491211
Alignment:
| Q |
315 |
tttagagtgtgtttggacgagggaatgcaattttttgagagaatt |
359 |
Q |
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| T |
35491167 |
tttagagtgtgttttgatgagggaatgcaacgttttgagagaatt |
35491211 |
T |
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