View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17665_low_1 (Length: 309)
Name: NF17665_low_1
Description: NF17665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17665_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 51766513 - 51766792
Alignment:
| Q |
17 |
agttagtggctgtagtgctagtttaatttttgcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttct |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||| |
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| T |
51766513 |
agttagtggttgtagtgctagtttaatttttgcattagttagtggtggatgtacagcttattgcattagttaggcttaac--tatatatcttccacttct |
51766610 |
T |
|
| Q |
117 |
gttacaatacatgtacagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgtttta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
51766611 |
gttacaatacatgtacagtatatatacttaggtgtgcctcactattctacttactcaataatgaaaattactttccatttattcaaagctaagtgtttta |
51766710 |
T |
|
| Q |
217 |
ataggattcttacttgatagtatattgccatatgaccatatcaacaactcaaccaaatcattagtattttcatttgcttcat |
298 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51766711 |
atatgattcttacttgatagtatattgccatatgaccatatcaacaactcaaccaaatcattagtattttcatttgcttcat |
51766792 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 11335501 - 11335701
Alignment:
| Q |
17 |
agttagtggctgtagtgctagtttaatttttgcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
11335501 |
agttagtggctgtagtgctagtttaatttttgcattagttagtggtggttgtacagcttattgcattagttaggcttaac--tatatatcttccacttct |
11335598 |
T |
|
| Q |
117 |
gttacaatacatgtacagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgtttta |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
11335599 |
gttacaatacatgtacagtatatatatttagatgtgcctcactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgtttta |
11335698 |
T |
|
| Q |
217 |
ata |
219 |
Q |
| |
|
||| |
|
|
| T |
11335699 |
ata |
11335701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 11337863 - 11338064
Alignment:
| Q |
17 |
agttagtggctgtagtgctagtttaatttttgcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
11337863 |
agttagtggctgtagtgctagtttaatttttgcattagttagtggtggttgtacaacttattgcattagttagacttaa--ctatatatcttccacttct |
11337960 |
T |
|
| Q |
117 |
gttacaatacatgtacagtatatatacttagatgtg-cctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgtttt |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||| |||||||||| |
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|
| T |
11337961 |
gttgcaatacatgtacagtatatatacttagatgtgccctcactattctaatcactcaataatgaaaattaccttccatttattcaaagttcagtgtttt |
11338060 |
T |
|
| Q |
216 |
aata |
219 |
Q |
| |
|
|||| |
|
|
| T |
11338061 |
aata |
11338064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 19479332 - 19479531
Alignment:
| Q |
19 |
ttagtggctgtagtgctagtttaattttt-gcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||| |||||| ||||||| ||||||||||| |
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|
| T |
19479332 |
ttagtggctgtagtgctagtttaattttttgcattagttagtggtggttgtacagcttattccattagttaggcttaac--tatatattttccacttctg |
19479429 |
T |
|
| Q |
118 |
ttacaatacatgtacagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaa |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
19479430 |
ttacaatacatgtaaagtatatatacttagatgtgcctcactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgttttaa |
19479529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19483960 - 19484161
Alignment:
| Q |
18 |
gttagtggctgtagtgctagtttaattttt--gcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttc |
115 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
19483960 |
gttagtggttgtagtgctagttaaatttttttgcattagttagtggtggctgtacagcttattgcattagttaggcttaac--tatatatcttccacttc |
19484057 |
T |
|
| Q |
116 |
tgttacaatacatgtacagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgtttt |
215 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| || |||| ||||| |
|
|
| T |
19484058 |
tgttacaatacatgtaaagtatataaacttagatgtgcctcactattctaatcactcaataatgaaaattactttccatttattcagagttcagagtttt |
19484157 |
T |
|
| Q |
216 |
aata |
219 |
Q |
| |
|
|||| |
|
|
| T |
19484158 |
aata |
19484161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 19743451 - 19743651
Alignment:
| Q |
17 |
agttagtggctgtagtgctagtttaatttttgcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttct |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
19743451 |
agttagtggctgtagtgctagtttattttttgcattagttagtgatggctgtacagcttattgcattagttaggcttaac--tatacatcttccacttct |
19743548 |
T |
|
| Q |
117 |
gttacaatacatgtacagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgtttta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
19743549 |
gttacaatacatgtacagtatatatacttagatgtgcctcactattctaatcactcaataataaaaattactttccatttattcaaagtttagtgtttta |
19743648 |
T |
|
| Q |
217 |
ata |
219 |
Q |
| |
|
||| |
|
|
| T |
19743649 |
ata |
19743651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 19738815 - 19739001
Alignment:
| Q |
31 |
gtgctagtttaatttttgcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttctgttacaatacatgt |
130 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
19738815 |
gtgctagtttattttttgcattagttagtggtggccgtacagcttattgcattagttaggcttaac--tatacatcttccacttctgttacaatgcatgt |
19738912 |
T |
|
| Q |
131 |
acagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgttttaata |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
19738913 |
acggtatatatacttagatgtgcctcactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgttttaata |
19739001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 3277431 - 3277230
Alignment:
| Q |
17 |
agttagtggctgtagtgctagtttaattt-ttgcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttc |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
3277431 |
agttagtggctatagtgctagtttaatttattgcattagttagtggtggttgtacagcttattgcattagtcaggcttaac--tatatatcttccacttc |
3277334 |
T |
|
| Q |
116 |
tgttacaatacatgtacagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgtttt |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
3277333 |
tgttacaatacatgtaaagtatatatacttagatgtgcctcactattctaatcactcaataatgaaaattactttccatttattcaaagttccgtgtttt |
3277234 |
T |
|
| Q |
216 |
aata |
219 |
Q |
| |
|
|||| |
|
|
| T |
3277233 |
aata |
3277230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 3279078 - 3278877
Alignment:
| Q |
17 |
agttagtggctgtagtgctagtttaattt-ttgcattagttagtggtggccgtacaacttattgcattagttacgcttaatcatatatatcttccacttc |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
3279078 |
agttagtggccatagtgctagtttaatttattgcattagttagtggtggttgtacagcttattgcattagttaggcttaac--tatatatcttccacttc |
3278981 |
T |
|
| Q |
116 |
tgttacaatacatgtacagtatatatacttagatgtgcctcactattctacttactcaataatgaaaattacttttcatttattcaaagctcagtgtttt |
215 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
3278980 |
tgttacaatacatgtaaagtatatacacttagatgtgcctcactattctaatcactcaataatgaaaattactttccatttattcaaagttcagtgtttt |
3278881 |
T |
|
| Q |
216 |
aata |
219 |
Q |
| |
|
|||| |
|
|
| T |
3278880 |
aata |
3278877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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