View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17666_high_1 (Length: 379)
Name: NF17666_high_1
Description: NF17666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17666_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 35459271 - 35458913
Alignment:
| Q |
16 |
attagcactaagattatcaaatacttgttgatcaagggtggtaaaagtgaagggtgtttggaaccaattcatatcatctgagaataaacctttataacga |
115 |
Q |
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| T |
35459271 |
attagcactaagattatcaaatacttgttgatcaagggtggtaaaagtgaagggtgtttggaaccaattcatatcatctgagaataaacctttataacga |
35459172 |
T |
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| Q |
116 |
gagttaaccatgttcttaagataaacttcatcattagtccaatcaccatcagaattccttagcatttgaattttatttttccatttgccattaac----- |
210 |
Q |
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| T |
35459171 |
gagttaaccatgttcttaagataaacttcatcataagtccaatcaccatcagaattccttagcatttgaattttatttttccatttgccattaacaattc |
35459072 |
T |
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| Q |
211 |
------aattttcaaatgataatgcttggtattcatgtctccatcagttaaccatatagctctagacttttggaaccaagtcagttcctccttgtaaagg |
304 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35459071 |
tcaaacaattttcaaatgataatgcttggaattcatgtctccatcagttaaccatatagctctagacttttggaaccaagtcagttcctccttgtaaagg |
35458972 |
T |
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| Q |
305 |
acattggctacgttttgcctataaccaaaagtagaaaatttccattcctgcattatatt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35458971 |
acattggctacgttttgcctataaccaaaagtagaaaatttccattcctgcattatatt |
35458913 |
T |
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