View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17666_high_3 (Length: 364)
Name: NF17666_high_3
Description: NF17666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17666_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 41655413 - 41655763
Alignment:
| Q |
1 |
catttatttgcacataccacaggtacaattgtgcatgcatgcgcacacacacatgtgcgtacttgtgtttaaattgttgatggatcttccaatgcacaaa |
100 |
Q |
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| T |
41655413 |
catttatttgcacataccacaggtacaattgtgcatgtgtgcgcgcacacacatgtgcgtacttgtgtttaaattgttgatggatcttccaatgcacaaa |
41655512 |
T |
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| Q |
101 |
tttaaactagttagatggatgaaaatgaatataaaagaatgaaacaaaatgggaagaaggacaacagtggtattctttcatttggtgtatcttgattaat |
200 |
Q |
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| T |
41655513 |
tttaaactagttagatggatgaaaatgaatataaaagaatgaaacaaaatgggaagaatgaaactagt-------------ttggtgtatcttaattaat |
41655599 |
T |
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| Q |
201 |
taggaacaatgatatgcctgcttttattagatttttaagaggtttatcctccctgcccttagttttcacttgtctttatttatcataataaattgaaccg |
300 |
Q |
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| T |
41655600 |
taggaacaatgatatgcctgcttttattagatttttaagagggttatcctccctgcccttagttttcacttgtctttatttatcataataaattgaacgg |
41655699 |
T |
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| Q |
301 |
tcaagtttattcttgtatagtttcctttctatttttctgattgaaaaagccatacagtttagga |
364 |
Q |
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| T |
41655700 |
tcgagtttattcttgtatagtttcctttctatttttctgattgaaaaagccatacagtttagga |
41655763 |
T |
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