View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17666_low_2 (Length: 364)

Name: NF17666_low_2
Description: NF17666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17666_low_2
NF17666_low_2
[»] chr4 (2 HSPs)
chr4 (21-315)||(53213064-53213352)
chr4 (103-227)||(43733851-43733975)
[»] chr3 (6 HSPs)
chr3 (65-315)||(20537617-20537847)
chr3 (102-221)||(43892050-43892169)
chr3 (128-183)||(9581884-9581939)
chr3 (115-221)||(47105836-47105942)
chr3 (103-207)||(14737292-14737396)
chr3 (160-218)||(29210883-29210941)
[»] chr2 (4 HSPs)
chr2 (102-221)||(16468384-16468503)
chr2 (128-205)||(32195706-32195783)
chr2 (103-174)||(25392054-25392125)
chr2 (23-69)||(32195574-32195620)
[»] chr8 (1 HSPs)
chr8 (148-227)||(5896328-5896407)
[»] chr1 (3 HSPs)
chr1 (115-221)||(23809431-23809537)
chr1 (103-221)||(44139672-44139790)
chr1 (181-227)||(8771271-8771317)
[»] chr7 (5 HSPs)
chr7 (110-193)||(43203527-43203610)
chr7 (148-194)||(5645274-5645320)
chr7 (185-227)||(34762704-34762746)
chr7 (185-227)||(34764101-34764143)
chr7 (148-177)||(18221554-18221583)
[»] scaffold0010 (1 HSPs)
scaffold0010 (185-227)||(236671-236713)
[»] chr5 (1 HSPs)
chr5 (128-173)||(19132858-19132903)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 53213352 - 53213064
Alignment:
Q  21 ccctctttaaaaatgacaatttccaatgacatgcaaaatgttatctttggtggaagctctttcagctcgcaatattccctccaatgaatttggggattta 120  Q
    ||||||||||||||| ||||||||||||     ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  53213352 ccctctttaaaaatggcaatttccaatg-----caaaatggtatctttggtggaagctctcttagctcgcaatattccctccaatgaatttggggattta 53213258  T
Q  121 gtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctcataacgtagctagagctg 220  Q
    ||||| || ||||||||||||||||||| ||||| ||||||| |||||||||||| ||| |||||||||||||| |||||||||||| ||| ||||||||    
T  53213257 gttttgaa-tgtaagagtctcttatacaataatcacgactatatagtgtcgtttgctcggaggtaagcaaataaggtagctcataacatagttagagctg 53213159  T
Q  221 ccttatcataccttaggccccaaacttttcaggaagcctcttctactttgtatcccttgatctttaatatgaagtgcagtaattttgctttgttt 315  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53213158 ctttatcataccttaggccccaaacttttcaggaagcctcttctactttgtatcccttgatctttaatatgaaatgcagtaattttgctttgttt 53213064  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 43733851 - 43733975
Alignment:
Q  103 aatgaatttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctc 202  Q
    ||||||||||| || ||||| | | ||||||||||||| || |  |||||||||||||||||| |||||||| |    ||| |||||||||  |||||||    
T  43733851 aatgaatttggtgacttagtatctgaatgtaagagtcttttgtctagtaatcccgactatgtaatgtcgtttatcaagaggcaagcaaatatggtagctc 43733950  T
Q  203 ataacgtagctagagctgccttatc 227  Q
    |||   | |||||||||||||||||    
T  43733951 atagtattgctagagctgccttatc 43733975  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 315
Target Start/End: Original strand, 20537617 - 20537847
Alignment:
Q  65 ctttggtggaagctctttcagctcgcaatattccctccaatgaatttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgt 164  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||                || ||||| |||||||| ||||||||| ||||  |    
T  20537617 ctttggtggacgctctttcagctcgcaatattccctccaatgattttgg----------------tggaagagcctcttatatagtaatcccaactacat 20537700  T
Q  165 agtgtcgtttgttcgaaggtaagcaaataaagtagctcataacgtagctagagctgccttatcataccttaggccccaaacttttcaggaagcctcttct 264  Q
    ||||||||||||| | ||| |||||||||| |||||||||||  ||||||||| |||||||||| ||| ||| |||||   ||||||||||||||||| |    
T  20537701 agtgtcgtttgtttggaggcaagcaaataaggtagctcataagatagctagagttgccttatcacaccctagcccccatgattttcaggaagcctcttat 20537800  T
Q  265 actttgtatcccttgatctttaatatgaagtgcagtaattttgctttgttt 315  Q
    || |||||  ||||||||||||  ||||| ||||||||||||  |||||||    
T  20537801 acattgta--ccttgatcttta--atgaaatgcagtaattttaatttgttt 20537847  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 43892050 - 43892169
Alignment:
Q  102 caatgaatttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagct 201  Q
    ||||||| |||| ||||||||||   ||||||| | |||||| |  ||||| |||||||||||||||||||||||| | ||| |||||||||  || |||    
T  43892050 caatgaaattggtgatttagtttcggaatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggct 43892149  T
Q  202 cataacgtagctagagctgc 221  Q
    |||||| | |||||||||||    
T  43892150 cataacattgctagagctgc 43892169  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 9581884 - 9581939
Alignment:
Q  128 aatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaagg 183  Q
    ||||||||||||| |||| || |||| ||||||||||||||||||||||| |||||    
T  9581884 aatgtaagagtcttttatgcaataattccgactatgtagtgtcgtttgttagaagg 9581939  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 47105836 - 47105942
Alignment:
Q  115 gatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctcataacgtagcta 214  Q
    ||||||||||   ||||||| | |||||| |  |||||||||||||||||||||||||||||  | ||| || ||||||| || ||||||||| | || |    
T  47105836 gatttagtttcagaatgtaaaactctcttgttaagtaatcccgactatgtagtgtcgtttgtgaggaggcaaacaaataatgtggctcataacattgcaa 47105935  T
Q  215 gagctgc 221  Q
    |||||||    
T  47105936 gagctgc 47105942  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 14737292 - 14737396
Alignment:
Q  103 aatgaatttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctc 202  Q
    |||||| |||| ||||||||||   ||||||| | |||||| |  |||||| ||||||||||||| ||||||||| | ||| |||||||||  || ||||    
T  14737292 aatgaaattggtgatttagtttcggaatgtaaaactctcttgttaagtaatgccgactatgtagtttcgtttgtttggaggcaagcaaatagtgtggctc 14737391  T
Q  203 ataac 207  Q
    |||||    
T  14737392 ataac 14737396  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 29210941 - 29210883
Alignment:
Q  160 tatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctcataacgtagctagagc 218  Q
    ||||| |||||||||||||| ||| |||||||||||||| |||||| | | ||||||||    
T  29210941 tatgtggtgtcgtttgttcggaggcaagcaaataaagtaactcatagcattgctagagc 29210883  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 16468503 - 16468384
Alignment:
Q  102 caatgaatttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagct 201  Q
    ||||||| |||| |||||| |||   ||||||| | |||||| |  ||||| |||||||||||||||||||||||| | ||||||||||| |  ||||||    
T  16468503 caatgaaattggtgatttaatttcggaatgtaaaattctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagct 16468404  T
Q  202 cataacgtagctagagctgc 221  Q
    |||||| | |||||||||||    
T  16468403 cataacattgctagagctgc 16468384  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 32195706 - 32195783
Alignment:
Q  128 aatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctcata 205  Q
    ||||||||||||||||||  ||||||||||||||| ||||||||| ||   ||||| || |||||| |||||||||||    
T  32195706 aatgtaagagtctcttatgtagtaatcccgactatttagtgtcgtatgccagaaggaaaacaaatacagtagctcata 32195783  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 25392125 - 25392054
Alignment:
Q  103 aatgaatttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgttt 174  Q
    |||||| |||| ||||||||||   ||||||||| |||||| |  |||||||||||||||||||||||||||    
T  25392125 aatgaaattggtgatttagtttcggaatgtaagactctcttgttaagtaatcccgactatgtagtgtcgttt 25392054  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 32195574 - 32195620
Alignment:
Q  23 ctctttaaaaatgacaatttccaatgacatgcaaaatgttatctttg 69  Q
    |||||||||||||| ||| ||||||||| |||| |||||||||||||    
T  32195574 ctctttaaaaatgataatctccaatgacttgcacaatgttatctttg 32195620  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Complemental strand, 5896407 - 5896328
Alignment:
Q  148 agtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctcataacgtagctagagctgccttatc 227  Q
    ||||||||| |||||||||||||||||||| | ||| ||| ||||| |||||||||||   | |||||||||||||||||    
T  5896407 agtaatcccaactatgtagtgtcgtttgttaggaggcaagaaaatatagtagctcatagtattgctagagctgccttatc 5896328  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 23809431 - 23809537
Alignment:
Q  115 gatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctcataacgtagcta 214  Q
    ||||||||||   ||||||| | |||||| |  |||||| ||||||||||||||||||||||| | ||| |||||||||  || ||||||||| | || |    
T  23809431 gatttagtttcagaatgtaaaactctcttgttaagtaattccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgcaa 23809530  T
Q  215 gagctgc 221  Q
    |||||||    
T  23809531 gagctgc 23809537  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 44139672 - 44139790
Alignment:
Q  103 aatgaatttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataaagtagctc 202  Q
    |||||| |||| ||||||||||   ||||||| | |||||| |  | ||||||||||||| |||||||||||||| | ||| |||||||||  || ||||    
T  44139672 aatgaaattggtgatttagtttcagaatgtaaaactctcttgttaaataatcccgactatatagtgtcgtttgttaggaggcaagcaaatagtgtggctc 44139771  T
Q  203 ataacgtagctagagctgc 221  Q
    ||||| | || ||||||||    
T  44139772 ataacattgcaagagctgc 44139790  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 8771317 - 8771271
Alignment:
Q  181 aggtaagcaaataaagtagctcataacgtagctagagctgccttatc 227  Q
    |||||||||||||| |||||||||||| ||||||||| | |||||||    
T  8771317 aggtaagcaaataaggtagctcataacatagctagagtttccttatc 8771271  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 43203610 - 43203527
Alignment:
Q  110 ttggggatttagtttttaaatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaata 193  Q
    |||| ||||||||||   ||||||| | |||||| |  ||||| |||||||||||||||||||||||| | ||| |||||||||    
T  43203610 ttggtgatttagtttcggaatgtaaaactctcttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaata 43203527  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 5645274 - 5645320
Alignment:
Q  148 agtaatcccgactatgtagtgtcgtttgttcgaaggtaagcaaataa 194  Q
    ||||| ||||| | ||| |||||||||||||||||||||||||||||    
T  5645274 agtaaccccgattttgtcgtgtcgtttgttcgaaggtaagcaaataa 5645320  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 34762746 - 34762704
Alignment:
Q  185 aagcaaataaagtagctcataacgtagctagagctgccttatc 227  Q
    |||||||||| |||||||||||| ||||||||||| |||||||    
T  34762746 aagcaaataaggtagctcataacatagctagagcttccttatc 34762704  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 34764101 - 34764143
Alignment:
Q  185 aagcaaataaagtagctcataacgtagctagagctgccttatc 227  Q
    |||||||||| |||||||||||| ||||||||||| |||||||    
T  34764101 aagcaaataaggtagctcataacatagctagagcttccttatc 34764143  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Complemental strand, 18221583 - 18221554
Alignment:
Q  148 agtaatcccgactatgtagtgtcgtttgtt 177  Q
    ||||||||||||||||||||||||||||||    
T  18221583 agtaatcccgactatgtagtgtcgtttgtt 18221554  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 236713 - 236671
Alignment:
Q  185 aagcaaataaagtagctcataacgtagctagagctgccttatc 227  Q
    |||||||||| |||||||||||| ||||||||||| |||||||    
T  236713 aagcaaataaggtagctcataacatagctagagcttccttatc 236671  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 19132858 - 19132903
Alignment:
Q  128 aatgtaagagtctcttatacagtaatcccgactatgtagtgtcgtt 173  Q
    ||||||||||||||||||  |||||| || ||||||||||||||||    
T  19132858 aatgtaagagtctcttatttagtaattccaactatgtagtgtcgtt 19132903  T

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