View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17667_high_1 (Length: 557)
Name: NF17667_high_1
Description: NF17667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17667_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 25 - 548
Target Start/End: Complemental strand, 32593738 - 32593218
Alignment:
| Q |
25 |
tgtcctatggtttttacattagcggtgtcgacggatccatgtcaatatcatgtcaaatgtccgtatcggggtatgtgcttcataggttaaataagttgtt |
124 |
Q |
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| T |
32593738 |
tgtcctatggtttttacattagcggtatcgacggatcc-tatcagtattatgtcaaatgtccgtgtcggagtatgtgcttgataggttaaataagttgtt |
32593640 |
T |
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| Q |
125 |
tgacaagtagtcgtcatatggtgcgttggagaaggaggaacctcatcattatccatcatgggttaatgattcaagaaagaaatatgttgctggtaattgg |
224 |
Q |
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| T |
32593639 |
tgacaagtagtagtcatatggtgagttggagaaggaggaacctcatcattatcgatcatggattaacgcttcaagaaagtaatatgttgctggtaattgg |
32593540 |
T |
|
| Q |
225 |
ttcaatactgcaccatactacaacatggctggtcgctctcatagtaacgaaaatagttagttgtccctcttggctcttgcagatttaggaacgatcccat |
324 |
Q |
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| T |
32593539 |
ttcaatactgcaccatactacaacatggctggtcgctctcatagtaacgaaaatagttagttgtccctcttggctcttgcagatttaggaacgatcccat |
32593440 |
T |
|
| Q |
325 |
atggaggttgtacaacattggaattgtttgtgactatgtcgcgaaaggggatgtgcatgtggtcttggatttgttatcagaattttgatcatttcctatt |
424 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32593439 |
atggaggttgtacaacattggaattatttgtgactatgt--cgaaaggggatgtgcatgtggtcttggatctgttatcagaattttgatcatttcctatt |
32593342 |
T |
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| Q |
425 |
taataaagaaaatggactttagccattaaatagtgactcatgtctcatggcatgtccatacaggctctcaacattaaaggcaaactcaacttgtccactc |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32593341 |
taataaagaaaatggactttagccattaaatagtgactcatgtctcatggcatgtccatacaggctctcaacattaaaggcaaactcaaattgtccactc |
32593242 |
T |
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| Q |
525 |
cttattaactactatcatattctt |
548 |
Q |
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| T |
32593241 |
cttattaactactatcatattctt |
32593218 |
T |
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