View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17667_high_1_N (Length: 376)
Name: NF17667_high_1_N
Description: NF17667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17667_high_1_N |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 32062276 - 32062628
Alignment:
| Q |
1 |
agtttcaaaagtaaatggctttgtttttccccgacctaaggatgttccttctgagaaatctagggatatggatgcacaaaaatctcataattcaaagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062276 |
agtttcaaaagtaaatggctttgtttttccccgacctaaggatgttccttctgagaaatctagggatatggatgcacaaaaatctcataattcaaagttc |
32062375 |
T |
|
| Q |
101 |
agagaagatacagttgttcgtagatttgttggttctgccattttggatgaaccaaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062376 |
agagaagatacagttgttcgtagatttgttggttctgccattttggatgaaccaaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatca |
32062475 |
T |
|
| Q |
201 |
acatgaaggaagcaatggatgacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
32062476 |
acatgaaggaagcaatggatgacataaacaacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaa |
32062575 |
T |
|
| Q |
301 |
caatagtggaaaggaattcggtgggttttcaatccttgccgatgatgatgatg |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062576 |
caatagtggaaaggaattcggtgggttttcaatccttgccgatgatgatgatg |
32062628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
242 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
341 |
Q |
| |
|
||||||||||| |||||| | || ||||| | | ||||||| ||||| |||| || |||||| |||||||||||| || |||||||||| || ||||| | |
|
|
| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
|
| Q |
342 |
atgatga |
348 |
Q |
| |
|
||||||| |
|
|
| T |
32062752 |
atgatga |
32062758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University