View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17667_low_1 (Length: 557)
Name: NF17667_low_1
Description: NF17667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17667_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 25 - 548
Target Start/End: Complemental strand, 32593738 - 32593218
Alignment:
| Q |
25 |
tgtcctatggtttttacattagcggtgtcgacggatccatgtcaatatcatgtcaaatgtccgtatcggggtatgtgcttcataggttaaataagttgtt |
124 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| | ||| ||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||| |
|
|
| T |
32593738 |
tgtcctatggtttttacattagcggtatcgacggatcc-tatcagtattatgtcaaatgtccgtgtcggagtatgtgcttgataggttaaataagttgtt |
32593640 |
T |
|
| Q |
125 |
tgacaagtagtcgtcatatggtgcgttggagaaggaggaacctcatcattatccatcatgggttaatgattcaagaaagaaatatgttgctggtaattgg |
224 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| | |||||||||| |||||||||||||||||||| |
|
|
| T |
32593639 |
tgacaagtagtagtcatatggtgagttggagaaggaggaacctcatcattatcgatcatggattaacgcttcaagaaagtaatatgttgctggtaattgg |
32593540 |
T |
|
| Q |
225 |
ttcaatactgcaccatactacaacatggctggtcgctctcatagtaacgaaaatagttagttgtccctcttggctcttgcagatttaggaacgatcccat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593539 |
ttcaatactgcaccatactacaacatggctggtcgctctcatagtaacgaaaatagttagttgtccctcttggctcttgcagatttaggaacgatcccat |
32593440 |
T |
|
| Q |
325 |
atggaggttgtacaacattggaattgtttgtgactatgtcgcgaaaggggatgtgcatgtggtcttggatttgttatcagaattttgatcatttcctatt |
424 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32593439 |
atggaggttgtacaacattggaattatttgtgactatgt--cgaaaggggatgtgcatgtggtcttggatctgttatcagaattttgatcatttcctatt |
32593342 |
T |
|
| Q |
425 |
taataaagaaaatggactttagccattaaatagtgactcatgtctcatggcatgtccatacaggctctcaacattaaaggcaaactcaacttgtccactc |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32593341 |
taataaagaaaatggactttagccattaaatagtgactcatgtctcatggcatgtccatacaggctctcaacattaaaggcaaactcaaattgtccactc |
32593242 |
T |
|
| Q |
525 |
cttattaactactatcatattctt |
548 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32593241 |
cttattaactactatcatattctt |
32593218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University