View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17668_high_14 (Length: 485)
Name: NF17668_high_14
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 36281226 - 36280768
Alignment:
| Q |
7 |
catttgacaaattttctaatattattttagccacgtcgtatggtgttatgtgctcatggtggtatgtgcttgttaggggtaggaaggggcggttgtgtgt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36281226 |
catttgacaaattttctaatattattttagccacgtcatatggtgttatgtgcttatggtggtatgtgcttgttaggggtaggaaggggcggttgtgtgt |
36281127 |
T |
|
| Q |
107 |
tgagaggggggatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttgg |
206 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36281126 |
tgagaggggcgatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataaaattagttgg |
36281027 |
T |
|
| Q |
207 |
aagatgtgtgatgggaattctactttgtttttgttagattcctgattggatgatatgtccctgagat--acttatagaagattatacgagttagctgata |
304 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36281026 |
aagatgtgtgatgggaattttactttgtttttgttagatccctgattggatgatatgcccctgagatacacttatagaagattatacgagttagctgata |
36280927 |
T |
|
| Q |
305 |
taaattgacaaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36280926 |
taaattgacaaatgtagagaatgtgttcattatggggtggggagtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaagagttg |
36280827 |
T |
|
| Q |
405 |
gtgagagagactgtgttgggcggttaattccaatggttttacaggttggatcagttgat |
463 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36280826 |
gtgagagagagtgtgttgggcggctaactccaatggttttacaggttggatcagttgat |
36280768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 104 - 404
Target Start/End: Complemental strand, 7130227 - 7129924
Alignment:
| Q |
104 |
tgttgagaggggggatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagt |
203 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||||||| |||||| ||| ||||||||||||||||||||| || |||| |||||||||| |||||| |
|
|
| T |
7130227 |
tgttgagaggggtgatgggtcggtgtggcggcagactatgaaaagtataagaaagggcgtgggtcaggtggatgttgggtggttgagagataacattagt |
7130128 |
T |
|
| Q |
204 |
tggaagatgtgtgatgggaattctactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctg |
301 |
Q |
| |
|
||| || |||||| || ||||||| |||||| ||||||| |||| |||| || |||| ||||| || | || | |||||||||| |||||||| | |
|
|
| T |
7130127 |
cagaacgtgggtgatgcgacttctactatgttttggttagatccctggttgggtggtatgctcctgaaggagagttttggaagattatatgagttagcgg |
7130028 |
T |
|
| Q |
302 |
at-ataaattgacaaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaa |
400 |
Q |
| |
|
|| | |||||| ||| ||||||| || |||| ||||| |||||||| | ||| |||||| ||| |||||| |||||||||| ||| ||||||||||| | |
|
|
| T |
7130027 |
ataaaaaattggcaattgtagagcatatgtttattatagggtggggagagaatggtgaggcgtgtaagtggtgtaggaggttgttttcttgggaggaaga |
7129928 |
T |
|
| Q |
401 |
gttg |
404 |
Q |
| |
|
|||| |
|
|
| T |
7129927 |
gttg |
7129924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 409
Target Start/End: Original strand, 6820618 - 6820907
Alignment:
| Q |
117 |
gatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtg |
216 |
Q |
| |
|
||||||| |||||| ||||| | ||||||||||||| |||||| |||||||||| || |||| |||||||||| ||||||| ||| || ||| |
|
|
| T |
6820618 |
gatgggttggtgtgatggcatattatgagaagtatctaagagggtgtgggtcaggcgggtggt-------tgagagataacattagttagaacgtgggtg |
6820710 |
T |
|
| Q |
217 |
atgggaattctactttgtttttgttagattcctgatt-ggatgatatgtccctgag--atacttatagaagattatacgagttagctgata-taaattga |
312 |
Q |
| |
|
||||||| |||||| |||||| ||||||| | || || ||||| | || || |||| ||| ||||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
6820711 |
atgggaactctactctgttttggttagatccttggtttggatggtttgcccttgagggatagttatagaagattatatgagttagctgacaataaattgg |
6820810 |
T |
|
| Q |
313 |
caaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgag |
409 |
Q |
| |
|
||| |||||||||| |||||| || | ||||| |||||||||||| ||||||||| ||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
6820811 |
caactgtagagaatatgttcactacatgatggggagtgaacggtgaggagtggaagtagcgtatgaggttatttgcttggaaggaagagttggtgag |
6820907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Original strand, 48352158 - 48352193
Alignment:
| Q |
362 |
gtggaagtggcgtaggaggttatttgcttgggagga |
397 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48352158 |
gtggaagtggcggaggaggttatttgcttgggagga |
48352193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 26955856 - 26955807
Alignment:
| Q |
349 |
tgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaa |
398 |
Q |
| |
|
|||| ||||||| ||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
26955856 |
tgaatggtgagacgtgaaagtggcgtaagaggttgtttgcttgggaggaa |
26955807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 1072450 - 1072606
Alignment:
| Q |
102 |
tgtgttgagaggggggatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatatta |
201 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||| || || || |||||||| | ||| |||||||||||||||| |
|
|
| T |
1072450 |
tgtgttgagaggggtgatgggtcggtatggtggcagactatgagaaatattagagagggagtaggacacgtggatggagggtgactgagagataatatta |
1072549 |
T |
|
| Q |
202 |
gttggaagatgtgtgatgggaattctactttgtttttgttagattcctgattggatg |
258 |
Q |
| |
|
|| ||||| || || ||| ||||| ||||||||||| ||||||| ||| ||||||| |
|
|
| T |
1072550 |
gtcggaaggtgggtaatgagaattttactttgttttggttagatctctggttggatg |
1072606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 1072686 - 1072755
Alignment:
| Q |
335 |
tatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg |
404 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| ||||| |||||||||||| | | |||||||||| ||||| |
|
|
| T |
1072686 |
tatggggtggggtgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaagagttg |
1072755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 463
Target Start/End: Complemental strand, 33178381 - 33178045
Alignment:
| Q |
127 |
tgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatgggaattc |
226 |
Q |
| |
|
|||||||||||| ||| |||| ||| ||||||| ||||| || |||||||| | |||| | || ||||||||||| ||||| || | ||||| || || |
|
|
| T |
33178381 |
tgtggtggcagagtataagaaatattagagaggaggtgggacaagtggatggagggtggttaagggataatattagccggaaggtgggggatggaaactc |
33178282 |
T |
|
| Q |
227 |
tactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgatataaattgacaaatgtagaga |
324 |
Q |
| |
|
|||| |||||| | ||||| | || ||||||| |||| | |||| ||| || | |||||| ||||||||| ||| |||| ||||||| ||| | | |
|
|
| T |
33178281 |
tactctgttttgggtagatccgtggttggatggtatgcctctgaaggattgttttcaaagattttacgagttaactgcaataagttgacaactgtggtgg |
33178182 |
T |
|
| Q |
325 |
atgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttggg |
424 |
Q |
| |
|
|| |||| ||||||||||||| |||| || ||| ||||||||||||| |||||| || |||||||||||| |||||||||| ||| ||||| ||| |
|
|
| T |
33178181 |
atatgttttctatggggtgggggctgaatggagaggcgtggaagtggcgtcagaggttgttcgcttgggaggaagagttggtgagggag--tgtgtaggg |
33178084 |
T |
|
| Q |
425 |
cggttaattccaatggttttacaggttggatcagttgat |
463 |
Q |
| |
|
|| ||| |||| | ||||||||||||||||||| |||| |
|
|
| T |
33178083 |
cgtctaactccagttgttttacaggttggatcaggtgat |
33178045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 15038804 - 15038747
Alignment:
| Q |
342 |
tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaa |
399 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
15038804 |
tggggagtgaacggtgagccgtggaagtggtgtaggacgttgtttgcttgggaggaaa |
15038747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 463
Target Start/End: Complemental strand, 16305411 - 16305297
Alignment:
| Q |
347 |
ggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttgggcggttaattccaatggttttac |
446 |
Q |
| |
|
|||||| |||||| |||||||| | ||||||||||||| |||||||||||| ||||| |||| ||| |||||| ||| | ||| | | ||||||| | |
|
|
| T |
16305411 |
ggtgaatggtgaggtgtggaagttgtgtaggaggttattcgcttgggaggaagagttgctgagggag--tgtgttaggcagctaacttgagtggttttgc |
16305314 |
T |
|
| Q |
447 |
aggttggatcagttgat |
463 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
16305313 |
aggttggaacagttgat |
16305297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 48710397 - 48710362
Alignment:
| Q |
362 |
gtggaagtggcgtaggaggttatttgcttgggagga |
397 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48710397 |
gtggaagtggcgtaggaggttatttgcgtgggagga |
48710362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 13217011 - 13216975
Alignment:
| Q |
362 |
gtggaagtggcgtaggaggttatttgcttgggaggaa |
398 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
13217011 |
gtggaagtggagtaggaggttattagcttgggaggaa |
13216975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 27515915 - 27515880
Alignment:
| Q |
362 |
gtggaagtggcgtaggaggttatttgcttgggagga |
397 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27515915 |
gtggaagtggcgtaggaggttatttgcgtgggagga |
27515880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 42918027 - 42918063
Alignment:
| Q |
362 |
gtggaagtggcgtaggaggttatttgcttgggaggaa |
398 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
42918027 |
gtggaaatggcggaggaggttatttgcttgggaggaa |
42918063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 2845488 - 2845423
Alignment:
| Q |
342 |
tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtg |
407 |
Q |
| |
|
||||| ||||||||||||| | |||||||||| ||||| || |||||||| || || ||||||||| |
|
|
| T |
2845488 |
tggggagtgaacggtgagacgaggaagtggcgaaggagattgtttgcttgagatgagaagttggtg |
2845423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University