View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_15 (Length: 483)
Name: NF17668_high_15
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 233 - 467
Target Start/End: Original strand, 42398109 - 42398343
Alignment:
| Q |
233 |
taatctaatgtgaatttgtgtatttgtaaatttgtgatcagagcttaaaaatgcccaaggattacaatggatcaccaaagcattataatcagcttgaatc |
332 |
Q |
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| T |
42398109 |
taatctaatgtgaatttgtgtatttgaaaatttgtgatcagagctaaaaaatgcccaaggattacaatggatcaccaaagcattataatcagcttgaatc |
42398208 |
T |
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| Q |
333 |
caagagaaatagactcacatggattttaggtgtaagtggtctatgtattttgtcctatgtaatgggtgcatggaaaaatacagcaacacctactaaccaa |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42398209 |
caagagaaatagactcacatggattttaggtgtaagtggtctatgtattttgtcctatgtaatgggtgcatggaaaaatacagcaacacctactaaccaa |
42398308 |
T |
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| Q |
433 |
tctgaggcatactcaaaagtagattgtaatgttgg |
467 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42398309 |
tctgaggcatactcaaaagtagattgtaatgttgg |
42398343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 42397964 - 42398064
Alignment:
| Q |
73 |
gaataaagagataaaattatgctcaatcagccggactgaagattagtcctatagccggtccaaagggctgac-----cgatgtgggtttcaatgtgttaa |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42397964 |
gaataaagagataaaattatgctcaatcagccggactgaagattagtcctatagccggtccaaagggctgactgatgtgatgtgggtttcaatgtgttaa |
42398063 |
T |
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| Q |
168 |
t |
168 |
Q |
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| T |
42398064 |
t |
42398064 |
T |
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