View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_20 (Length: 448)
Name: NF17668_high_20
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 31609595 - 31609176
Alignment:
| Q |
1 |
ttggcctttcttttcttcttcttagacttcacttgacccatgcaagaaaccttaggagaggatggttctcgcgcgctaaagcttatacttccatgctttc |
100 |
Q |
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| T |
31609595 |
ttggcctttcttttcttcttcttagacttcacttgacccatgcaagaaaccttaggagaggatggttctcgcgcgctaaagcttatacttctatgctttc |
31609496 |
T |
|
| Q |
101 |
ttcgcgcttcttttggaattattgaaacctttcttgcagttgtaacacttgcgttaggactcaatgttgggttttgataactagaaaccgaagctacagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31609495 |
ttcgcgcttcttttggaattattgaaacctttcttgcagttgtaacacttgcgttaggactcaatgttgggttttgataactagaaaccgaagctacagg |
31609396 |
T |
|
| Q |
201 |
tcgttttggtagaaacttgaaaaacttgtttttcatttttgatagtttctccatgttgatgagacacacaagctatgactctttgagagccttaatcgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31609395 |
tcgttttggtagaaacttgaaaaacttgtttttcatttttgatagtttctccatgttgatgagacacacaagctatgactctttgagagccttaatcgat |
31609296 |
T |
|
| Q |
301 |
tcttcttcttcnnnnnnnnnnnnnnnngttactatacttaagaataatgagttatggctatgcaaggcaaatgtcgagaactaacaaggcatggtatata |
400 |
Q |
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|||| || | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31609295 |
tcttttttat----------tttttttgttactatacttaaaaataatgagttatggttatgcaaggcaaatgtcgagaactaacaaggcatggtatata |
31609206 |
T |
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| Q |
401 |
aatgacataaggcaaaatgaaagtgatttt |
430 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31609205 |
aatgacataaggcaaaatgaaagtgatttt |
31609176 |
T |
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