View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17668_high_26 (Length: 423)
Name: NF17668_high_26
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 172 - 408
Target Start/End: Complemental strand, 26804048 - 26803812
Alignment:
| Q |
172 |
tgatagtttaatttattataggtttataaaaactaaactcatattttaatacaaattcatatgtaccctttttgatacttagtgcaattttgttttatct |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26804048 |
tgatagtttaatttattataggtttataaaaactaaactcatattttaatacaaattcataggtaccctttttgatatttagtgcaattttgttttatct |
26803949 |
T |
|
| Q |
272 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26803948 |
taaagcaacaagtgttaactttaatgtctcttttgataaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgaca |
26803849 |
T |
|
| Q |
372 |
agtaagtccctacccctctctctctcacacacctatg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26803848 |
agtaagtccctacccctctctctctcacacacctatg |
26803812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 26804258 - 26804105
Alignment:
| Q |
18 |
cttgattcaaagactactaatcaagaggagaagagatgcagcttcatcacaaccaattcaggtaattggtagttataaatattttaaaagatttataatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26804258 |
cttgattcaaagactactaatcaagaggagaagagatgcagcttcatcacaaccaattcaggtaattggtagttataaatattttaaaagatt--taatt |
26804161 |
T |
|
| Q |
118 |
ctaaaagaaaattattagaaagtcaatcaattataattgtctgaatattaaaaatg |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26804160 |
ctaaaagaaaattattagaaagtcaatcaattataattgtctgaatattaaaaatg |
26804105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 378
Target Start/End: Complemental strand, 18417082 - 18416999
Alignment:
| Q |
296 |
tgtctcttttgat-aaacagatcctatctatattgcttatcatgatgaagaatggggagttccagttcatgatgacaagtaagt |
378 |
Q |
| |
|
|||||||||| || ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18417082 |
tgtctctttttattaaatagatcccatctatattgcttatcatgatgaggaatggggagttccagttcatgatgacaagtaagt |
18416999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 54546851 - 54546811
Alignment:
| Q |
335 |
catgatgaagaatggggagttccagttcatgatgacaagta |
375 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
54546851 |
catgatgaagaatggggagttccagtacatgacgacaagta |
54546811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University