View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_29 (Length: 362)
Name: NF17668_high_29
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 346
Target Start/End: Original strand, 34995509 - 34995846
Alignment:
| Q |
10 |
aatatggctggtattgaatcagtggttttttgtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcacgagaaatccagaa |
109 |
Q |
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| T |
34995509 |
aatatggctggtattgcatcattggttttttgtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcacgagaaatccagaa |
34995608 |
T |
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| Q |
110 |
gcaaggtatgccctaccacttttttcttattaaaggcatagcaggacatgttctaacacatttacattc----nnnnnnnnnattgaatacttgtagtgg |
205 |
Q |
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| T |
34995609 |
gcaaggtatgccctaacacttttttcttattaaaggcatagcaggacatgttctaacacatttacattctttttttttttttattgaatacttgtagtgg |
34995708 |
T |
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| Q |
206 |
gataaactttcagaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagtt |
305 |
Q |
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| T |
34995709 |
gataaactttcagaaaaccttgctattcaagaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagtt |
34995808 |
T |
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| Q |
306 |
caatccttatttactaccaccaatattccttttcagttcat |
346 |
Q |
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| T |
34995809 |
caatccttatt---taccaccaatattccttttcagttcat |
34995846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 34987143 - 34987427
Alignment:
| Q |
35 |
ttttttgtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcacgagaaatccagaagcaaggtatgccctaccactttttt |
134 |
Q |
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| T |
34987143 |
ttttttgtactactctttggcttaatgtctccccaaatcgattattcaacttccttcggcatgagaaatccagaagcaaggtatgccctaacactttttt |
34987242 |
T |
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| Q |
135 |
cttattaaaggcatagcaggacatgttctaacacatttacattcnnnnnnnnnattgaatacttgtagtgggataaactttcagaaaaccttgctattca |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||| |||||||| |||||| |
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| T |
34987243 |
cttattaaaggcatagcaggacatgttctaacacatttacattctttgtttttattgaataattatagtgggataaacattcacaaaacctttctattcg |
34987342 |
T |
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| Q |
235 |
agaattcgcatgcatgctcactggcaaacatccagagaatcgtgtttctttgcttagcgcaagtgtaagttcaatccttatttac |
319 |
Q |
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| T |
34987343 |
agaattcgcatgcattctcaccggcaaacatccagagaatcgtgtttctttgcttagagcaagggtaagtttaatccttatttac |
34987427 |
T |
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