View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_3 (Length: 787)
Name: NF17668_high_3
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 694; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 17 - 778
Target Start/End: Complemental strand, 35182950 - 35182187
Alignment:
| Q |
17 |
gcagcatttgctatacaagcaatacttgcttgtaacgtgagtgaagagtatggtcctacactttggaaagcacatgacttcctgaaggcctcacaggtag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35182950 |
gcagcatttgctatacaagcaatacttgcttgtaacgtgagtgaagagtatggtcctacactttggaaagcacatgacttcctgaaggcctcacaggtag |
35182851 |
T |
|
| Q |
117 |
ttgaaaatccatccggtgagttcaaagcaatgtacagacacatatgcaaaggatcgtggacattctcaatgcatgaccaaggttggcaagtctctgactg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35182850 |
ttgaaaatccatccggtgagttcaaagcaatgtacagacacatatgcaaaggatcgtggacattctcaatgcatgaccaaggttggcaagtctctgactg |
35182751 |
T |
|
| Q |
217 |
cactgcagaaggactcaaggttttgctgattatatgccatatataaatgttaactatttttgcaggtttttcaaaatatacatgcatggcatgacataat |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35182750 |
caccgcagaaggactcaaggttttgctgattatatgccatatataaatgttaactatttttgtaggtttttcaaaatatacatgcatggcatgacataat |
35182651 |
T |
|
| Q |
317 |
attcatgaccacacatgcaggccgcactcctgttgtcaaaaatgccaagtgatcttgttggagaaaaattggaatcagagcgactctacgatgctgttaa |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35182650 |
attcatgacaacacatgcaggccgcactcctgttgtcaaaaatgccaagtgatcttgttggagaaaaattggaatcagagcgactctacgatgctgttaa |
35182551 |
T |
|
| Q |
417 |
tgtcatcctctcgctacagagcagtaatggcgggttccctgcttgggagcctcaaaatgcttacagttggttagaggtatactatgaagttacttttatt |
516 |
Q |
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| T |
35182550 |
tgtcatcctctcgctacagagcagtaatggcgggttccctgcttgggagcctcaaaatgcttacagttggttagaggtatactatgaagttacttttatt |
35182451 |
T |
|
| Q |
517 |
cgttaaacaaattgttatataaaagaaaagtttgtaagaatgacaaccaactaattctatgcatgcatgtccgctgcagaaattcaatccaactgaattc |
616 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35182450 |
cgtcaaacaaattgttatataaaagaaaagtttgtaagaatgacaaccaactaattctatgcatgcatgtccgctgcagaaattcaatccaactgaattc |
35182351 |
T |
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| Q |
617 |
tttgaagacacgctgattgagagggagtaagatatatagcaaacatcaatcataaacatata--nnnnnnnnnnnnnattcattgttgaagcatatataa |
714 |
Q |
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| T |
35182350 |
tttgaagacacgctgattgagagggagtaagatatatagcaaacatcaatcataaacatatatgtgtgtgtgtgtatattcattgttgaagcatatataa |
35182251 |
T |
|
| Q |
715 |
atttctcactgcatatatgtgttcattgtgaaattaataggtatgctgagtgcacaggttctgc |
778 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35182250 |
atttctcactgcatatatgtgttcattgtgaaattaataggtatgctgagtgcactggttctgc |
35182187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 12328007 - 12327787
Alignment:
| Q |
17 |
gcagcatttgctatacaagcaatacttgcttgtaacgtgagtgaagagtatggtcctacactttggaaagcacatgacttcctgaaggcctcacaggtag |
116 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||| |||||||||| |||| || ||| | |||||||||| |
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| T |
12328007 |
gcagcatttgctatacaagcaatagttggttgtaacgtgagtgaggattatggtcctacacttaagaaagcacatcactttcttaagtcttcacaggtag |
12327908 |
T |
|
| Q |
117 |
ttgaaaatccatccggtgagttcaaagcaatgtacagacacatatgcaaaggatcgtggacattctcaatgcatgaccaaggttggcaagtctctgactg |
216 |
Q |
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||||||| ||||| ||||| || | ||||||||||||||||| |||||||| | |||||||||||||| || || ||||||||||||| || ||||| |
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| T |
12327907 |
ttgaaaacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattctcaatacaagatgaaggttggcaagtttccgactg |
12327808 |
T |
|
| Q |
217 |
cactgcagaaggactcaaggt |
237 |
Q |
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||||||||||| ||||||||| |
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| T |
12327807 |
cactgcagaagcactcaaggt |
12327787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 12294770 - 12294550
Alignment:
| Q |
17 |
gcagcatttgctatacaagcaatacttgcttgtaacgtgagtgaagagtatggtcctacactttggaaagcacatgacttcctgaaggcctcacaggtag |
116 |
Q |
| |
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||||||||| |||||||||||||| ||| ||||||||| ||||| |||||||||| |||||| | ||||||||||| || |||||||| |||||||| | |
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| T |
12294770 |
gcagcattttctatacaagcaatagttggttgtaacgtaagtgaggagtatggtcgcacacttcgaaaagcacatgaatttctgaaggcttcacaggtgg |
12294671 |
T |
|
| Q |
117 |
ttgaaaatccatccggtgagttcaaagcaatgtacagacacatatgcaaaggatcgtggacattctcaatgcatgaccaaggttggcaagtctctgactg |
216 |
Q |
| |
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|||| || ||||| ||||| || | ||||||||||||||||| |||||||| | |||||||| ||||| || || |||||||||||| ||||||||| |
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| T |
12294670 |
ttgataacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattttcaatacaagatgaaggttggcaagcctctgactg |
12294571 |
T |
|
| Q |
217 |
cactgcagaaggactcaaggt |
237 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
12294570 |
cactgcagtaggactcaaggt |
12294550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 328 - 434
Target Start/End: Complemental strand, 12294047 - 12293941
Alignment:
| Q |
328 |
cacatgcaggccgcactcctgttgtcaaaaatgccaagtgatcttgttggagaaaaattggaatcagagcgactctacgatgctgttaatgtcatcctct |
427 |
Q |
| |
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||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||| |
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| T |
12294047 |
cacatgcaggctgcactcttgttgtcacaaatgccaagtgatcttgttggagaaaaattggaaacagagagattatacgatgctgttaatgtcatcctct |
12293948 |
T |
|
| Q |
428 |
cgctaca |
434 |
Q |
| |
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| ||||| |
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| T |
12293947 |
ctctaca |
12293941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 327 - 434
Target Start/End: Complemental strand, 12326945 - 12326838
Alignment:
| Q |
327 |
acacatgcaggccgcactcctgttgtcaaaaatgccaagtgatcttgttggagaaaaattggaatcagagcgactctacgatgctgttaatgtcatcctc |
426 |
Q |
| |
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|||| |||||||| ||||||| |||||| ||||||| | || ||| |||||||||||| ||||| |||||||| |||| |||||||||||||| |||||| |
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| T |
12326945 |
acacttgcaggccacactcctattgtcacaaatgcctactgctctcgttggagaaaaaatggaaacagagcgattctatgatgctgttaatgtgatcctc |
12326846 |
T |
|
| Q |
427 |
tcgctaca |
434 |
Q |
| |
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|| ||||| |
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| T |
12326845 |
tctctaca |
12326838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 650
Target Start/End: Complemental strand, 12292834 - 12292773
Alignment:
| Q |
589 |
gctgcagaaattcaatccaactgaattctttgaagacacgctgattgagagggagtaagata |
650 |
Q |
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|||||||||| ||||||||| |||| |||||||||| | ||| |||||| ||||||||||| |
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| T |
12292834 |
gctgcagaaactcaatccaagtgaagtctttgaagatagcctggttgagaaggagtaagata |
12292773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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