View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_high_32 (Length: 345)

Name: NF17668_high_32
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_high_32
NF17668_high_32
[»] chr2 (20 HSPs)
chr2 (17-331)||(5254369-5254684)
chr2 (11-331)||(14106172-14106496)
chr2 (64-331)||(7460836-7461107)
chr2 (17-331)||(7874404-7874709)
chr2 (17-331)||(14405311-14405630)
chr2 (159-331)||(14436916-14437088)
chr2 (187-322)||(387463-387599)
chr2 (193-331)||(39338510-39338649)
chr2 (187-331)||(43248876-43249015)
chr2 (236-331)||(43816096-43816192)
chr2 (193-331)||(10524391-10524529)
chr2 (187-321)||(22888552-22888686)
chr2 (194-331)||(41877201-41877339)
chr2 (237-324)||(13512495-13512583)
chr2 (237-331)||(3745678-3745773)
chr2 (237-315)||(17116553-17116632)
chr2 (255-326)||(15457817-15457889)
chr2 (222-276)||(45311509-45311563)
chr2 (265-331)||(9823694-9823761)
chr2 (224-264)||(15457267-15457307)
[»] chr8 (23 HSPs)
chr8 (19-326)||(35815898-35816209)
chr8 (11-331)||(38577435-38577764)
chr8 (11-331)||(15821026-15821353)
chr8 (187-331)||(31207011-31207156)
chr8 (187-331)||(12897925-12898070)
chr8 (185-331)||(3584022-3584170)
chr8 (119-324)||(36631044-36631247)
chr8 (107-324)||(20138633-20138851)
chr8 (187-331)||(22773908-22774053)
chr8 (187-331)||(32065934-32066078)
chr8 (187-326)||(37986509-37986649)
chr8 (187-331)||(24995044-24995189)
chr8 (187-326)||(16457129-16457268)
chr8 (187-326)||(35821543-35821681)
chr8 (187-300)||(27889133-27889247)
chr8 (187-300)||(27947791-27947905)
chr8 (187-325)||(9519793-9519932)
chr8 (187-276)||(34388712-34388801)
chr8 (187-293)||(41893093-41893198)
chr8 (276-331)||(9659479-9659534)
chr8 (239-331)||(13538324-13538417)
chr8 (239-331)||(13686057-13686150)
chr8 (291-331)||(34866309-34866349)
[»] chr1 (16 HSPs)
chr1 (19-331)||(27031490-27031806)
chr1 (17-331)||(46814114-46814435)
chr1 (17-331)||(24659042-24659351)
chr1 (187-331)||(30685573-30685718)
chr1 (121-331)||(24684142-24684350)
chr1 (17-201)||(7857766-7857955)
chr1 (119-326)||(24449585-24449791)
chr1 (188-324)||(6804825-6804962)
chr1 (187-331)||(7002476-7002619)
chr1 (187-331)||(31584689-31584833)
chr1 (119-274)||(5459381-5459534)
chr1 (237-331)||(40216155-40216250)
chr1 (119-276)||(46692524-46692680)
chr1 (107-276)||(5389128-5389296)
chr1 (237-331)||(14320660-14320755)
chr1 (187-325)||(41920744-41920883)
[»] chr3 (21 HSPs)
chr3 (21-331)||(40023218-40023536)
chr3 (17-331)||(23327997-23328318)
chr3 (17-331)||(45398909-45399217)
chr3 (96-331)||(34475407-34475642)
chr3 (171-331)||(50305223-50305384)
chr3 (187-324)||(2392159-2392297)
chr3 (187-324)||(2393922-2394060)
chr3 (215-331)||(50559959-50560076)
chr3 (107-331)||(19176710-19176938)
chr3 (187-331)||(31483167-31483312)
chr3 (187-331)||(47235985-47236130)
chr3 (185-325)||(21343633-21343773)
chr3 (187-331)||(45164141-45164285)
chr3 (224-325)||(25506725-25506827)
chr3 (143-319)||(43012619-43012796)
chr3 (190-302)||(30352117-30352230)
chr3 (187-331)||(17551244-17551389)
chr3 (222-331)||(4463734-4463844)
chr3 (11-101)||(21342642-21342732)
chr3 (191-276)||(9583758-9583843)
chr3 (253-326)||(37158659-37158732)
[»] chr4 (19 HSPs)
chr4 (20-331)||(2825899-2826213)
chr4 (17-327)||(31050314-31050629)
chr4 (17-331)||(35341000-35341306)
chr4 (184-331)||(4305991-4306136)
chr4 (119-276)||(8255247-8255403)
chr4 (119-276)||(8268665-8268821)
chr4 (119-315)||(20464810-20465005)
chr4 (237-331)||(7703024-7703118)
chr4 (187-331)||(27555579-27555725)
chr4 (195-331)||(35329302-35329439)
chr4 (224-331)||(46698428-46698536)
chr4 (187-325)||(30964724-30964863)
chr4 (187-325)||(36689460-36689599)
chr4 (194-325)||(30167218-30167352)
chr4 (222-276)||(49528408-49528462)
chr4 (187-331)||(8705789-8705930)
chr4 (195-326)||(11281379-11281511)
chr4 (227-331)||(52868760-52868866)
chr4 (249-325)||(9750116-9750192)
[»] chr7 (25 HSPs)
chr7 (65-331)||(6585043-6585318)
chr7 (173-331)||(34391455-34391614)
chr7 (119-331)||(31971784-31971995)
chr7 (187-331)||(5859932-5860077)
chr7 (119-331)||(47325534-47325746)
chr7 (107-324)||(44353220-44353438)
chr7 (19-209)||(35745592-35745792)
chr7 (196-331)||(42454383-42454519)
chr7 (190-326)||(3867405-3867541)
chr7 (187-325)||(3419054-3419191)
chr7 (222-326)||(11378775-11378879)
chr7 (187-326)||(37795283-37795423)
chr7 (187-326)||(37795611-37795751)
chr7 (17-151)||(34390075-34390214)
chr7 (187-331)||(10244467-10244612)
chr7 (187-331)||(25161096-25161240)
chr7 (213-331)||(48161690-48161808)
chr7 (187-331)||(33434480-33434625)
chr7 (187-276)||(38306547-38306636)
chr7 (187-326)||(41089400-41089537)
chr7 (187-317)||(3419321-3419450)
chr7 (107-274)||(40726212-40726379)
chr7 (17-75)||(8745264-8745322)
chr7 (285-331)||(40726140-40726186)
chr7 (187-326)||(43482192-43482331)
[»] chr5 (8 HSPs)
chr5 (119-331)||(18593463-18593674)
chr5 (187-325)||(34378386-34378525)
chr5 (119-331)||(7161663-7161877)
chr5 (191-331)||(698658-698799)
chr5 (119-276)||(29087699-29087854)
chr5 (187-324)||(5656749-5656887)
chr5 (237-331)||(7452925-7453020)
chr5 (242-324)||(18313310-18313393)
[»] scaffold0172 (1 HSPs)
scaffold0172 (187-326)||(19205-19345)
[»] scaffold0343 (1 HSPs)
scaffold0343 (119-325)||(5926-6131)
[»] chr6 (7 HSPs)
chr6 (187-331)||(3254244-3254389)
chr6 (187-331)||(15944286-15944431)
chr6 (119-324)||(10542052-10542255)
chr6 (248-331)||(15132489-15132573)
chr6 (224-276)||(33697802-33697854)
chr6 (187-326)||(3117781-3117921)
chr6 (259-327)||(14663414-14663481)
[»] scaffold0434 (1 HSPs)
scaffold0434 (187-300)||(2353-2467)
[»] scaffold0085 (1 HSPs)
scaffold0085 (187-331)||(48622-48767)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 5254369 - 5254684
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagttttttgaggggtgttctt 116  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  5254369 tcgagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgttgaagtctgagagttttttgaggggtgttctt 5254468  T
Q  117 taggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagttta 215  Q
    | |||||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  5254469 tgggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggtggtgatgtgttttggtgggttta 5254568  T
Q  216 tcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattcatatcttgcgtcttgcgaggatgacattta 315  Q
    |||||||| | ||||||| | |||||||||||||||| ||||||||||| ||||||||||| |||| | |||| ||| ||||||||||||||||| ||||    
T  5254569 tcttcatgagctttgtttggaggttatggtgtaccgtctatatgcggcaccatttgtatctatttcgtccataccttacgtcttgcgaggatgacgttta 5254668  T
Q  316 ataatatttgctgatt 331  Q
    ||||||||||||||||    
T  5254669 ataatatttgctgatt 5254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 14106496 - 14106172
Alignment:
Q  11 cagagatcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgagg 107  Q
    ||||| ||||||||||||| ||| || ||| |||||| |||  ||||||| |||||||||||||| ||| |||||||| ||||| ||||   ||||||||    
T  14106496 cagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggctcagcttgggtgttgaagtctgagagttttattttgagg 14106397  T
Q  108 ggtgttcttt--aggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttt 204  Q
    ||||||||||   |||||||||||| |||| || |||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||| |||||||    
T  14106396 ggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtccgtcttaggtggtgttgtgttt 14106297  T
Q  205 tggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcga 303  Q
    ||||| | ||||||||| |||  |||||| | |||||||||||||||| ||||||||||| ||||| |||| ||||||  ||||| | ||||||||||||    
T  14106296 tggtg-ggttatcttca-ggggcttgtttggtggttatggtgtaccgtctatatgcggcaccatttctatcttgtttc-gtcataccctgcgtcttgcga 14106200  T
Q  304 ggatgacatttaataatatttgctgatt 331  Q
    ||||| | ||||||||||||||||||||    
T  14106199 ggatggcgtttaataatatttgctgatt 14106172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 331
Target Start/End: Original strand, 7460836 - 7461107
Alignment:
Q  64 aatgtggctcagtttgagtgttgaaatctgatagtttt---ttgaggggtgttctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttc 158  Q
    |||||||||||| ||| |||||||| ||||  ||||||   |||||||||||||||| ||  |||||||||| |||| || |||||||||| |||||||     
T  7460836 aatgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgttta 7460935  T
Q  159 cagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttata 257  Q
    |||||||||||| ||||||||||| ||||||||| |||| |||| ||||||| | ||||||||| |||  |||||| | ||||||||||||| || ||||    
T  7460936 cagtgtttgtttctgttaaggtgtccgtcttaggcggtgttgtgatttggtg-ggttatcttca-ggggcttgtttggtggttatggtgtactgtctata 7461033  T
Q  258 tgcggcatcatttgta-tctgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||  || |||||||| | ||||||  |||||   ||||||||||| ||||||| ||||||||||||||||||||    
T  7461034 tgcaacaccatttgtattttgtttc-gtcatactctgcgtcttgcggggatgacgtttaataatatttgctgatt 7461107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 7874404 - 7874709
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgtt 113  Q
    ||||||||||||| || || | ||||||||  ||| ||||||||||||||||||||||| ||| |||||||| |||   ||||   ||||||||| ||||    
T  7874404 tcgagaggttgtggaaactacttgttcatttggttaggagcttttcgaatgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgtt 7874503  T
Q  114 cttt-aggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgag 211  Q
    ||||  |||||||||||| ||||||| |||||||||||||||||| |||||||||||| ||| ||||||| |||||||                ||||||    
T  7874504 ctttggggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgtcaaggtgtccgtctta----------------ggtgag 7874587  T
Q  212 tttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgac 310  Q
    ||||| |||| ||| ||||||| | |||||||||||||||| ||||||||||  |||||||||| |||||  |  ||| |||| |||||||||||||| |    
T  7874588 tttatattcaggggctttgtttggtggttatggtgtaccgtctatatgcggcgccatttgtatcttgttttgtctataccttgtgtcttgcgaggatggc 7874687  T
Q  311 -atttaataatatttgctgatt 331  Q
      ||||||||||||||||||||    
T  7874688 gttttaataatatttgctgatt 7874709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 14405311 - 14405630
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtttt---ttgaggggtgtt 113  Q
    ||||| ||||||| || ||||| |||||||  ||| ||||||| ||| |||||||||   ||| |||||||| ||||  ||||||   ||||||| ||||    
T  14405311 tcgagtggttgtggaaactgcacgttcatttggttaggagcttgtcgcatgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgtt 14405410  T
Q  114 ctttagg---tgagtagtgatgatgggttgttgtggatactgtgtttcc-agtgtttgtttt-gttaaggtgtacgtcttaggtggtgatgtgttttggt 208  Q
    |||| ||   ||||||||||  ||||||  |||||||  ||||||||   ||||||| |||| |||||||||| ||||||||||||||||||||||||||    
T  14405411 cttttgggggtgagtagtgacaatgggtgattgtgga--ctgtgttttatagtgtttatttttgttaaggtgtccgtcttaggtggtgatgtgttttggt 14405508  T
Q  209 gagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattcatatcttgcgtcttgcgaggatg 308  Q
     || ||||||| | ||| ||||||  | |||||||||||||||| ||||||| ||| |||||||||||  ||| |||||| ||| ||||||||  | ||     
T  14405509 -aggttatctttaggggctttgttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgttcgttcataccttacgtcttgcaggaata 14405607  T
Q  309 acatttaataatatttgctgatt 331  Q
    || ||||||||||||||||||||    
T  14405608 acgtttaataatatttgctgatt 14405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 331
Target Start/End: Complemental strand, 14437088 - 14436916
Alignment:
Q  159 cagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttata 257  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||| ||||||| ||| ||||||| | | || |||| |  ||||||||||||||| ||||    
T  14437088 cagtgtttgtttctgttaaggtgttcgtcttaggtgatgatgtgatttggtgggtt-atcttcaggagctt-gtttggttgttatggtgtaccgtctata 14436991  T
Q  258 tgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||||| ||||||||||| ||||| | |||| ||||||||||||| ||||| | ||||||||||||||||||||    
T  14436990 tgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 322
Target Start/End: Original strand, 387463 - 387599
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| |||||||||||||||| || ||  | |||||||||||||||| ||||||||||| |||||||||| |||||| | |    
T  387463 ttaggtggtgatgtgttttggtgggtttatcttcatgggtgtttttaagtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 387562  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatat 322  Q
    ||| | |||| ||||||  |||||| |||||||||||    
T  387563 ataccctgcgacttgcggtgatgacgtttaataatat 387599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 331
Target Start/End: Complemental strand, 39338649 - 39338510
Alignment:
Q  193 ggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatct 291  Q
    ||||||||||||||||| ||||||||||| |||| || |   | |||||||||||||||| ||||||||||| |||||||||| |||||| | ||||  |    
T  39338649 ggtgatgtgttttggtgggtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacat 39338550  T
Q  292 tgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||| ||| |||| | ||||||||||||||| ||||    
T  39338549 tgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 43249015 - 43248876
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattc 285  Q
    |||||||||||||||||||||||      ||||||| || ||||||| ||||||||| | |||||| ||||||||||  ||||| ||||| ||||| | |    
T  43249015 ttaggtggtgatgtgttttggtg------tcttcattggctttgtttgggggttatgatataccgtctatatgcggcgccatttatatcttgtttcgtcc 43248922  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||| |||||| ||||||||| |||||||||||||| |||||    
T  43248921 ataccttgtgtcttgtgaggatgacgtttaataatatttgatgatt 43248876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 331
Target Start/End: Complemental strand, 43816192 - 43816096
Alignment:
Q  236 gggttatggtgtaccgtttatatgcggcatcatttgta-tctgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||| | |||| ||||||| ||||| | ||||| ||||||||||||||| ||||    
T  43816192 gggttatggtgtaccgtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgatt 43816096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 331
Target Start/End: Original strand, 10524391 - 10524529
Alignment:
Q  193 ggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat-ctgtttcattcatatct 291  Q
    ||||| ||||||||||| ||||||||||| |||| || ||  | |||||||||||||| | ||||||| ||| |||||||||  |||||| | |||| ||    
T  10524391 ggtgacgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgctgcaccatttgtatattgtttcgtccatacct 10524490  T
Q  292 tgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||| ||| || | ||||||||||||||| ||||    
T  10524491 tgcgtcttgc-agggtggcgtttaataatatttgccgatt 10524529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 321
Target Start/End: Complemental strand, 22888686 - 22888552
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||| ||||||||| ||||||||||| |||| || ||    ||||||| | |||||| |||||| |||| ||||| || | |||||||| |    
T  22888686 ttaggtggtgatgcgttttggtgggtttatcttcaggggtgttcttagttggttatgatataccgtctatatgtggcaccatttctaccttgtttcatcc 22888587  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataata 321  Q
    |||  |||||||||||| ||||||||||||||||||    
T  22888586 atacattgcgtcttgcg-ggatgacatttaataata 22888552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 331
Target Start/End: Complemental strand, 41877339 - 41877201
Alignment:
Q  194 gtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattcatatctt 292  Q
    |||||||||||| | | ||||||||||| |||| || |   | |||||||||||||||| ||||| ||| | ||||||||| | ||||| | ||||||||    
T  41877339 gtgatgtgttttagagggtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatacggtaccatttgtatattgtttcgtccatatctt 41877240  T
Q  293 gcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||| |||||   |||||||||||||| |||||    
T  41877239 gcgtcttgcggggatggagtttaataatatttgttgatt 41877201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 13512583 - 13512495
Alignment:
Q  237 ggttatggtgtaccgtttatatgcggcatcatttgta-tctgtttcattcatatcttgcgtcttgcgaggatgacatttaataatattt 324  Q
    ||||||| |||||||| |||||||||||||||||||| | |||||| | ||||  |||||||||||| | ||||| |||||||||||||    
T  13512583 ggttatgttgtaccgtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatattt 13512495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 3745678 - 3745773
Alignment:
Q  237 ggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||||| |||||| | ||||||| ||| ||||||||||| ||||| | |||| ||||||||||  | ||||||||||||||||||||||| ||||    
T  3745678 ggttatgatgtaccatctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgatt 3745773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 17116632 - 17116553
Alignment:
Q  237 ggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacattta 315  Q
    |||||| ||||||||| |||||||||||||||||||||| ||| || | |||| ||||||||||||| ||||||| ||||    
T  17116632 ggttatagtgtaccgtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttgcggggatgacgttta 17116553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 15457817 - 15457889
Alignment:
Q  255 atatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    |||||||||| ||||||||||| ||||| | |||||| ||||||||||| ||||||| ||||||| |||||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgc 15457889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 45311563 - 45311509
Alignment:
Q  222 tgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    |||||||||||||| ||||||||||| |||| |||||| |||| |||||||||||    
T  45311563 tgggttttgttttgtggttatggtgttccgtatatatgtggcaccatttgtatct 45311509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 9823694 - 9823761
Alignment:
Q  265 tcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||||| |||||||||||| |||| ||||||||  |||| | ||||||||||||||| ||||    
T  9823694 tcatttgtatcttgtttcattcataccttgtgtcttgcggagatggcgtttaataatatttgccgatt 9823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 15457267 - 15457307
Alignment:
Q  224 ggttttgttttggggttatggtgtaccgtttatatgcggca 264  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  15457267 ggttttgatttgtggttatggtgtaccgtctatatgcggca 15457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 35816209 - 35815898
Alignment:
Q  19 gagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagttttttgaggggtgttcttta 118  Q
    ||||| ||||| ||||||||||||||||| |||  ||| ||||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||     
T  35816209 gagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcagtttggatgttgaagtcagagagttttttgaggggtgttctttg 35816110  T
Q  119 gg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagttta 215  Q
    ||  |||||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||  |||||| ||||||||| ||||||||| |||||    
T  35816109 ggggtgagtagtgatgatgggtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtctgtcttaagtggtgatgggttttggtgggttta 35816010  T
Q  216 tcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacattt 314  Q
    |||||||||| ||||||| |||||||||||||||||| |||||| |||| |||||||||| |||||| | |||| ||||||| ||||||||||| | |||    
T  35816009 tcttcatgggctttgtttgggggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatggcgttt 35815910  T
Q  315 aataatatttgc 326  Q
    ||||||||||||    
T  35815909 aataatatttgc 35815898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 38577764 - 38577435
Alignment:
Q  11 cagagatcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgat-agtttt---ttgag 106  Q
    ||||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||| ||  ||| |||||||| ||||   ||||||   ||| |    
T  38577764 cagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgttgaagtctggggagttttattttgtg 38577665  T
Q  107 gggtgttctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgttt-gttt-tgttaaggtgtacgtcttaggtggtgatgtgt 202  Q
    | ||||||||| ||  |||||||||| ||||| |  ||||||||||||||||| |||||||| |||| | || |||||| ||||||||||||||||||||    
T  38577664 gagtgttctttggggatgagtagtgacgatggatgattgtggatactgtgtttacagtgttttgtttatatttaggtgtccgtcttaggtggtgatgtgt 38577565  T
Q  203 tttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat-ctgtttcattcatatcttgcgtcttgc 301  Q
    ||||||| |||||||||||||  |||||||| |  |||||  |||||||| |||||||||||||||||||||  |||||| ||||||  || | ||||||    
T  38577564 tttggtgggtttatcttcatgtattttgtttggtagttattttgtaccgtctatatgcggcatcatttgtatattgtttcgttcatacattacatcttgc 38577465  T
Q  302 gaggatgacatttaataatatttgctgatt 331  Q
    |   ||||| |||||||||||||| |||||    
T  38577464 ggaaatgacgtttaataatatttgttgatt 38577435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 15821353 - 15821026
Alignment:
Q  11 cagagatcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtttt---ttgagg 107  Q
    ||||| ||||||||||||| || |  | ||||||||  ||| ||||||||||||||||||||||| | |  ||||||| ||||  ||||||   ||||||    
T  15821353 cagaggtcgagaggttgtggaaacaacttgttcatttggttaggagcttttcgaatgtggctcagctcggatgttgaagtctgggagttttattttgagg 15821254  T
Q  108 ggtgttctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgttt-gttt-tgttaaggtgtacgtcttaggtggtgatgtgtt 203  Q
     ||||||||| ||  |||||||||  |||| || |||||||||  ||||||| |  ||||| |||| |||||||||||  ||||||||||||||||||||    
T  15821253 agtgttcttttggagtgagtagtggcgatgagtggttgtggattttgtgtttaccttgttttgtttctgttaaggtgtctgtcttaggtggtgatgtgtt 15821154  T
Q  204 ttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcg 302  Q
    ||||||  |||||||||| ||||||| ||| | ||||||||| |||||| ||||||||||| |||||||||| |||| | | |||| ||||||||||||     
T  15821153 ttggtggttttatcttcaggggttttatttggtggttatggtataccgtctatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgc- 15821055  T
Q  303 aggatgacatttaataatatttgctgatt 331  Q
    |||||||| ||||||||||||||||||||    
T  15821054 aggatgacgtttaataatatttgctgatt 15821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 31207156 - 31207011
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||||||||||||||| | || || ||  | |||||||||||||||||||||| ||||| |||||||||| |||||| | |    
T  31207156 ttaggtggtgatgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtttatatacggcaccatttgtatcttgtttcgtcc 31207057  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||||||||||||||| | ||||||||||||||| ||||    
T  31207056 ataccttgcgtcttgcgaggatggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 12898070 - 12897925
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| ||||||||||| |||| || ||  | ||| |||||||||||| ||||||||||| |||||||||| |||||| | |    
T  12898070 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggtaatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 12897971  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  12897970 atatcttgcatcttgcggggatgacgtttaataatatttgccgatt 12897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 331
Target Start/End: Original strand, 3584022 - 3584170
Alignment:
Q  185 tcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc--tgtttca 282  Q
    ||||| |||||||||||| |||||| ||||||||| | ||| ||||||| | |||||||||||||||| ||||||||||| ||||||||||  ||||||     
T  3584022 tcttaagtggtgatgtgtgttggtgggtttatcttaaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatctttgtttcg 3584121  T
Q  283 ttcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||| || |||||||| | ||||| | ||||||||||||||||||||    
T  3584122 ttcatacctcgcgtcttgtggggatggcgtttaataatatttgctgatt 3584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 324
Target Start/End: Original strand, 36631044 - 36631247
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||| | ||||||  || |||||||| |||||| ||||||||||||| ||  || ||  || ||||||||||||||||||||||| ||||||||    
T  36631044 ggtgagtagttacgatgggcggtggtggataccgtgtttacagtgtttgttttttt--ggagtctgttttaggtggtgatgtgttttggtgggtttatct 36631141  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaat 317  Q
    ||| |||| || ||  | | |||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||||||||||||  ||||| | | ||||    
T  36631142 tcaggggtgtttttaggtgattatggtgtaccgtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatggcgtataat 36631240  T
Q  318 aatattt 324  Q
    |||||||    
T  36631241 aatattt 36631247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 20138633 - 20138851
Alignment:
Q  107 gggtgttcttt--aggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttt 204  Q
    |||||||||||  ||||||||||||| |||||   || |||||||| |||||| ||||| ||| ||| ||  || ||  || ||||||||||||||||||    
T  20138633 gggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt--ggagtctgttttaggtggtgatgtgttt 20138730  T
Q  205 tggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcga 303  Q
    ||||| |||||||| ||||||| || ||  | |||||||||||||| | ||||||||||| |||||||||| |||||| | ||||  ||||||||||||     
T  20138731 tggtgggtttatctccatgggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcgg 20138830  T
Q  304 ggatgacatttaataatattt 324  Q
    ||||| | |||||||||||||    
T  20138831 ggatggcgtttaataatattt 20138851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 22773908 - 22774053
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattc 285  Q
    |||||||||||| |||||||||| |||||||||||  ||| || ||    |||||||||||||||| ||||||||||| ||||||||||| ||||| | |    
T  22773908 ttaggtggtgatatgttttggtgggtttatcttcactggtgtttttagatggttatggtgtaccgtctatatgcggcaccatttgtatctagtttcgtcc 22774007  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||||||||| ||||| | ||||||||||||||| ||||    
T  22774008 ataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 32066078 - 32065934
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| ||||||||||| |||| || ||  | |||||| ||||||||| ||||||||||| |||||||||| |||||| | |    
T  32066078 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggttat-gtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 32065980  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||| |||||||  |||| | ||||||||||||||| ||||    
T  32065979 ataccttgcatcttgcggtgatggcgtttaataatatttgccgatt 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 187 - 326
Target Start/End: Complemental strand, 37986649 - 37986509
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||||||||||||  || ||||||||| | |||| || ||  | |||||||||||||||| ||||||| ||| |||||||||| |||||| | |    
T  37986649 ttaggtggtgatgtgttttaatgggtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtcc 37986550  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
     |  ||||||||||||| |||||||||||||||||||||||    
T  37986549 gtgccttgcgtcttgcggggatgacatttaataatatttgc 37986509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 24995189 - 24995044
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||||  |||||||||| ||||||||||| |||| || ||  | ||||||||||||| || |||| |||||| |||||||||| |||||| | |    
T  24995189 ttaggtggtgacatgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtactgtctataagcggcaccatttgtatcttgtttcgtcc 24995090  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||||||||| || ||||| | || |||||||||||||||||    
T  24995089 ataccttgcgtcttacggggatggcgttcaataatatttgctgatt 24995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 326
Target Start/End: Complemental strand, 16457268 - 16457129
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| | ||||| ||| || |||| ||  | |||||||||||||||| |||||| |||| |||||||||| |||||| | |    
T  16457268 ttaggtggtgatgtgttttggtgcgattatcctcaaggatttt-ttaggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcc 16457170  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||| ||| ||||||||  ||||||| |||||||||||||||    
T  16457169 ataccttacgtcttgcagggatgacgtttaataatatttgc 16457129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 35821543 - 35821681
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||  ||||||||| ||||| |||  |||||| ||  | |||||||||||||||| |||||||||||||||||||||| |||||| | |    
T  35821543 ttaggtggtgatgtagtttggtgagattatcctcagaggtttt-ttaagtggttatggtgtaccgtctatatgcggcatcatttgtatcatgtttcgtcc 35821641  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||  |||||||||||||  |||| | |||||||||||||||    
T  35821642 at-ccttgcgtcttgcggagatggcgtttaataatatttgc 35821681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 27889133 - 27889247
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| |||||||| || |||| || ||  | ||||||||||||| || ||||||||||| |||||||||| |||||| |      
T  27889133 ttaggtggtgatgtgttttggtgggtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtca 27889232  T
Q  286 atatcttgcgtcttg 300  Q
    ||| |||||||||||    
T  27889233 ataccttgcgtcttg 27889247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 27947791 - 27947905
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| |||||||| || |||| || ||  | ||||||||||||| || ||||||||||| |||||||||| |||||| |      
T  27947791 ttaggtggtgatgtgttttggtgggtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtca 27947890  T
Q  286 atatcttgcgtcttg 300  Q
    ||| |||||||||||    
T  27947891 ataccttgcgtcttg 27947905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 9519793 - 9519932
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||| ||||||||||| ||||||| ||| |||| || ||  | ||||||| ||||| || ||||||||||| |||||||||| |||||| | |    
T  9519793 ttaggtggtgacgtgttttggtgggtttatcatcaggggtgtttttaggtggttatgatgtactgtctatatgcggcaccatttgtatcttgtttcgtcc 9519892  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    ||| |||||||||||   |||||   ||||||||||||||    
T  9519893 ataccttgcgtcttgtagggatggtgtttaataatatttg 9519932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 34388801 - 34388712
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    |||||||||||||||||||| || ||||||||||| |||| || ||  | |||||||||||||||| ||||||| |||  ||||||||||    
T  34388801 ttaggtggtgatgtgttttgctgggtttatcttcacgggtgtttttaggtggttatggtgtaccgtctatatgcagcactatttgtatct 34388712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 41893198 - 41893093
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttgg-ggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattc 285  Q
    |||||| ||||||||||||||||  |||||| ||  ||||||| ||| || |||||||||||||||| |||||||| || ||||||||| | |||| |||    
T  41893198 ttaggtagtgatgtgttttggtggatttatcctc--gggttttttttaggtggttatggtgtaccgtctatatgcgacaccatttgtatttttttcgttc 41893101  T
Q  286 atatcttg 293  Q
    ||| ||||    
T  41893100 ataccttg 41893093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 9659479 - 9659534
Alignment:
Q  276 tgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||| | |||| ||||||||||||| ||||||| ||||||||||||||| ||||    
T  9659479 tgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 9659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 13538324 - 13538417
Alignment:
Q  239 ttatggtgtaccgtttatatgcggcatcatttgtatctg-tttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||| |||||||| ||||||||| | ||||||||| |  |||| | |||| ||||||||||| |  |||| | ||||||||||||||||||||    
T  13538324 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgatt 13538417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 13686150 - 13686057
Alignment:
Q  239 ttatggtgtaccgtttatatgcggcatcatttgtatctg-tttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||| |||||||| ||||||||| | ||||||||| |  |||| | |||| ||||||||||| |  |||| | ||||||||||||||||||||    
T  13686150 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgatt 13686057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 34866349 - 34866309
Alignment:
Q  291 ttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||||| ||||||| ||||||||||||||| ||||    
T  34866349 ttgcgtcttgcggggatgacgtttaataatatttgccgatt 34866309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 27031806 - 27031490
Alignment:
Q  19 gagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgttct 115  Q
    ||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||  ||||||| ||||  ||||   ||||||||||||||||    
T  27031806 gagaggttgtggaagctgcatgttcattcggttaagagcttttcgaatgtggctcagtttggatgttgaagtctgggagttttattttgaggggtgttct 27031707  T
Q  116 -ttaggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtt 213  Q
     |  |||||||||||| ||| ||  ||| |||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||  | | |    
T  27031706 ctggggtgagtagtgacgataggccgttatggatactgtgtttacagggtttgtttctgttaaggtgtccgtcttaggtggtgatgtgttttg--ggggt 27031609  T
Q  214 tatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat-ctgtttcattcatatcttgcgtcttgcgaggatgacat 312  Q
    |||||||| ||| ||||| | |||||||||||||||||| ||||||||||| ||||| |||  |||| | | |||||||||||||||||||||||||| |    
T  27031608 tatcttcaagggctttgtatgggggttatggtgtaccgtatatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgt 27031509  T
Q  313 ttaataatatttgctgatt 331  Q
    ||||||||||||| |||||    
T  27031508 ttaataatatttgatgatt 27031490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 46814435 - 46814114
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtttttt---gaggggtgtt 113  Q
    |||||||||||   |||||||| ||||||||  || ||||||||||||||||||||| |  || |||||||| | ||  |||||| |   ||||||||||    
T  46814435 tcgagaggttgcagaagctgcaagttcattcgattaggagcttttcgaatgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgtt 46814336  T
Q  114 cttt--aggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtga 210  Q
     |||  ||||||||||||| |||||   |||||||||||||||||| ||| |||||||| |||||||||||  |||||||||||||||||||||||||      
T  46814335 atttggaggtgagtagtgacgatggacggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttggtag 46814236  T
Q  211 gtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatga 309  Q
    ||||||||||| ||| ||||||| | |||||||||||||||| ||||||||||| |||||||||| |||||| | |||| ||| |||||||||||||||     
T  46814235 gtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatgg 46814136  T
Q  310 catttaataatatttgctgatt 331  Q
    | ||||||||||||| ||||||    
T  46814135 cgtttaataatatttactgatt 46814114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 24659042 - 24659351
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtttt---ttgaggggtgtt 113  Q
    ||||||||||||| ||||  ||||||||||| ||| | |||||||||||||||||||||  || | ||| || ||||  ||||||   ||||||||||||    
T  24659042 tcgagaggttgtggaagcatcatgttcattcggttagaagcttttcgaatgtggctcagcctgggagtt-aagtctgggagttttattttgaggggtgtt 24659140  T
Q  114 ctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtga 210  Q
     ||| ||  |||||||||| ||||||| ||| ||| |||||||||| || ||||||||| | ||||||||| | ||||||||||| |||||||||||||     
T  24659141 atttgggggtgagtagtgacgatgggtggttatggttactgtgtttacaatgtttgtttcttttaaggtgtccatcttaggtggttatgtgttttggtgg 24659240  T
Q  211 gtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatga 309  Q
    ||||||||||| ||| ||||||| | |||||||||||||||| ||||||||||| |||||||||| ||||||           |||||||||| ||||||    
T  24659241 gtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttc-----------gcgtcttgcggggatga 24659329  T
Q  310 catttaataatatttgctgatt 331  Q
    | ||||||||||||||||||||    
T  24659330 cgtttaataatatttgctgatt 24659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 30685718 - 30685573
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| ||||||||||| |||| || ||  | |||||||||||||| | ||||||||||| |||||||||| |||||| | |    
T  30685718 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtcc 30685619  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||||||||| ||||||| ||||||||||||||| ||||    
T  30685618 ataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 121 - 331
Target Start/End: Complemental strand, 24684350 - 24684142
Alignment:
Q  121 tgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatcttc 220  Q
    |||||||||| ||||||  || |||||||  |||||| ||| ||||||||| ||  || ||  || ||||||||||||||||||||||| ||||||||||    
T  24684350 tgagtagtgacgatgggcggtggtggatatcgtgtttacagagtttgttttttt--ggagtttgttttaggtggtgatgtgttttggtgggtttatcttc 24684253  T
Q  221 atgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattcatatcttgcgtcttgcgaggatgacatttaataat 320  Q
    | |||| || ||  | | |||||||||||||| |||||| |||| |||||||||||  ||  |||||| ||||| ||||||  ||||||||| |||||||    
T  24684252 aggggtgtttttaggtgattatggtgtaccgtctatatgtggcaccatttgtatcttgtttgttcataccttgcatcttgcagggatgacatataataat 24684153  T
Q  321 atttgctgatt 331  Q
    |||||| ||||    
T  24684152 atttgccgatt 24684142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 7857766 - 7857955
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgtt 113  Q
    ||||||||||||| ||||||| ||| ||||| ||| |||||||||  |||||||||||||||| |||||||| ||||  ||||   ||||||||||||||    
T  7857766 tcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgtt 7857865  T
Q  114 cttt--aggtgagtagtgatgatgggttgttgtggatactgtgtttccagtg-tttgttt-tgttaaggtgtacgtcttaggtggtgatgtg 201  Q
    || |   |||||||||||  ||||||| |||||||  || |||||| ||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  7857866 ctatgggggtgagtagtggcgatgggtggttgtgg--accgtgtttacagtgttttgtttctgttaaggtgtccgtcttaggtgatgatgtg 7857955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 119 - 326
Target Start/End: Complemental strand, 24449791 - 24449585
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaag-gtgtacgtcttaggtggtgatgtgttttggtgagtttatc 217  Q
    |||||||||||| ||||||  || |||||||| |||||| ||||| ||||||| ||  | || ||| |  |||||||||||||||||||||| |||||||    
T  24449791 ggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgttttttttggagtctactt--taggtggtgatgtgttttggtgtgtttatc 24449694  T
Q  218 ttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaa 316  Q
    |  | |||| || || || |||||||||||||||| ||||||| ||| |||||||||| |||||| | |||| ||||| ||||||| ||||| | |||||    
T  24449693 tctaggggtgtttttatgtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcatcttgcg-ggatggcgtttaa 24449595  T
Q  317 taatatttgc 326  Q
    ||||||||||    
T  24449594 taatatttgc 24449585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 6804825 - 6804962
Alignment:
Q  188 taggtggtgatgtgttttggtgagtttatcttcatgggttttgttttgg-ggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattca 286  Q
    |||||||||||||||||||||| | ||||| ||  || |||| ||| || |||||||||||||||| ||||||||||| ||||||||||| |||| | ||    
T  6804825 taggtggtgatgtgttttggtgggattatcctcggggtttttttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatctttttcgtcca 6804924  T
Q  287 tatcttgcgtcttgcgaggatgacatttaataatattt 324  Q
    || ||||||||||||| ||||  | |||||||||||||    
T  6804925 taccttgcgtcttgcggggatagcgtttaataatattt 6804962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 7002476 - 7002619
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| ||||||||  | ||||||| ||  | |||||||||||||||||||||||||||| | |||||||| |||||| | |    
T  7002476 ttaggtggtgatgtgttttggtgggtttatctcta-gggtttt-ttaagtggttatggtgtaccgtttatatgcggcaccttttgtatcttgtttcgtcc 7002573  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||| | | ||||||||||||| ||||||||||||||| ||||    
T  7002574 ataccttacattttgcgaggatgacgtttaataatatttgccgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 31584833 - 31584689
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||||  |||||||||| ||||||||||| |||| || ||  | |||||||||||| ||| ||||||||||| |||||||||| ||||||  ||    
T  31584833 ttaggtggtgacatgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttc-gtc 31584735  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||||||||||||||||||   ||||||||||||||| ||||    
T  31584734 ataccttgcgtcttgcgaggatggtgtttaataatatttgccgatt 31584689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 5459381 - 5459534
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||  || |||||||| |||||| ||||| ||||||| ||  || ||  || ||| || |||||||||||||||||||||||||    
T  5459381 ggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattgttttttt--ggagtttgttttaagtagtgatgtgttttggtgagtttatct 5459478  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat 274  Q
    ||| |||| || ||  | |||||||||||||||| ||||||||||| |||||||||    
T  5459479 tcaggggtatttttaggtggttatggtgtaccgtctatatgcggcaccatttgtat 5459534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 40216250 - 40216155
Alignment:
Q  237 ggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||||| |||||||| ||||||||||| ||||||||||| | ||| | ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  40216250 ggttatgatgtaccgtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatttgctgatt 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 276
Target Start/End: Complemental strand, 46692680 - 46692524
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||  || || ||||  |||||| ||||| ||||||| ||  || ||  || ||||||||||||||||||||| | ||||||||    
T  46692680 ggtgagtagtgacgatgggcggtggttgatatcgtgtttacagtgcttgttttttt--ggagtttgttttaggtggtgatgtgttttggagggtttatct 46692583  T
Q  219 tcatgggttttgttttgg-ggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||| |||| || ||| || |||||||||||||||| | ||||||||| ||||| |||||    
T  46692582 tcaggggtgttttttaggtggttatggtgtaccgtctttatgcggcaccatttttatct 46692524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 276
Target Start/End: Complemental strand, 5389296 - 5389128
Alignment:
Q  107 gggtgttctt-taggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgtttt 205  Q
    |||||||||| || ||||||||||| ||||||  || |||||||| |||||| | ||| ||||||| |   || ||  || |||||||||||||||||||    
T  5389296 gggtgttcttgtaagtgagtagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttttg--ggagtttgttttaggtggtgatgtgtttt 5389199  T
Q  206 ggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    |||  ||||||||  | |||| || ||  | |||||| |||| |||| ||||||||||| |||||||||||    
T  5389198 ggttggtttatctctaggggtgtttttaggtggttatagtgtgccgtctatatgcggcaccatttgtatct 5389128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 14320660 - 14320755
Alignment:
Q  237 ggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||||||||| |||||||| || ||||||||| | ||||  | |||| ||||| ||||| | ||||||| ||||||||||||||| ||||    
T  14320660 ggttatggtgtaccgtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 41920744 - 41920883
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgta-tctgtttcattc 285  Q
    |||||||||| ||| |||||||  ||||||||||| |||| || ||  | ||||| |||||||||| ||||||| |||  ||||||| | | |||| | |    
T  41920744 ttaggtggtggtgtattttggttggtttatcttcacgggtgtttttaggtggttacggtgtaccgtctatatgcagcacaatttgtattttatttcgtcc 41920843  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    ||| ||| |||||||||  |||||| ||||||||||||||    
T  41920844 ataccttacgtcttgcggagatgacgtttaataatatttg 41920883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 331
Target Start/End: Complemental strand, 40023536 - 40023218
Alignment:
Q  21 gaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtttt---ttgaggggtgttcttt 117  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| | | |||||| | ||||  ||||||   |||||||| |||||||    
T  40023536 gaggttgtggaagctgcatgttcattcggttaggagcttttcgaatgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttt 40023437  T
Q  118 agg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgttt-gttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtt 213  Q
     ||  |||||||||| ||||| | ||||||||||| |||||| |||||||| |||| |||||||||||  ||||||||||||||||||||||| || |||    
T  40023436 tgggatgagtagtgacgatggatggttgtggataccgtgtttacagtgttttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttgatgggtt 40023337  T
Q  214 tatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacat 312  Q
    |||||||| ||| ||||||| | |||||||||||||||| |||||||||||||||||||||| |||||| | ||||   ||||||||||| ||||||  |    
T  40023336 tatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgt 40023237  T
Q  313 ttaataatatttgctgatt 331  Q
    ||||||||||||| |||||    
T  40023236 ttaataatatttgttgatt 40023218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 23328318 - 23327997
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtttt---ttgaggggtgtt 113  Q
    ||||||||||||| ||||| | ||||||||| ||| ||||||||||||||||||||||| ||| |||||||| ||||  ||||||   ||||| ||||||    
T  23328318 tcgagaggttgtggaagctccttgttcattcggttaggagcttttcgaatgtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgtt 23328219  T
Q  114 ctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtga 210  Q
    |||| ||  |||||||||| ||||||| |||||||||| |||| || |||||||||||| |||||||  || |||||||||||||||| | |||| |||     
T  23328218 ctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttacagtgtttgtttctgttaagaggtccgtcttaggtggtgatatattttcgtgg 23328119  T
Q  211 gtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatga 309  Q
    ||||||| ||| ||| ||||||| | |||||||||||||||| ||||||||||| ||||| |||| |||||| | |||| ||||||| ||||  ||||      
T  23328118 gtttatcctcaagggctttgtttggtggttatggtgtaccgtatatatgcggcaccatttatatcttgtttcgtccataccttgcgtattgcagggatag 23328019  T
Q  310 catttaataatatttgctgatt 331  Q
    | ||||||||||||||||||||    
T  23328018 cgtttaataatatttgctgatt 23327997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 45398909 - 45399217
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgtt 113  Q
    ||||||||||||| ||||||||||||||||| |||  |||||||||||||||||| ||  ||  |||||||| | ||  ||||   ||||| ||||||||    
T  45398909 tcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtgttgaagtttgggagttctattttgtggggtgtt 45399008  T
Q  114 ctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgttt-gttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtg 209  Q
    | || ||  |||||||||| ||||| |  ||||||||| ||||||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  45399009 cgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtgttttgtttctgttaaggtgtccgtcttaggtggtgatgtgttttggtg 45399108  T
Q  210 agtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatg 308  Q
     |||||||||    |||          |||||||||||||||| ||||||||||| | |||||||| |||||| |||||| || ||||||| ||  ||||    
T  45399109 ggtttatctt----ggt----------ggttatggtgtaccgtctatatgcggcaccgtttgtatcttgtttcgttcatacctcgcgtctttcggagatg 45399194  T
Q  309 acatttaataatatttgctgatt 331  Q
     | ||||||||||||||||||||    
T  45399195 tcgtttaataatatttgctgatt 45399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 331
Target Start/End: Complemental strand, 34475642 - 34475407
Alignment:
Q  96 agttttttgaggggtgttcttta--ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtg 193  Q
    |||||||| | |||||||||||   |||||||||||| ||||||  || |||||||| |||||| || || ||||||| |   || ||  || |||||||    
T  34475642 agtttttttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacattgcttgtttttt---ggagtctgttttaggtg 34475546  T
Q  194 gtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatctt 292  Q
    ||||||||||||||||||||||||| || |||| || ||  | ||||||||| |||||| |||||| |||| |||||||||| |||||| |||||| | |    
T  34475545 gtgatgtgttttggtgagtttatctccaggggtgttcttaggtggttatggtataccgtctatatggggcaccatttgtatcttgtttcgttcataccct 34475446  T
Q  293 gcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||| ||||||| ||||||||||| ||| ||||    
T  34475445 gcgtcttgcggggatgacgtttaataatatgtgccgatt 34475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 50305384 - 50305223
Alignment:
Q  171 tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcattt 270  Q
    ||||||||||| ||||||||||||||  ||||||||||| ||||||||||| ||| ||| |||   |||||||||||||||| |||||||| || |||||    
T  50305384 tgttaaggtgttcgtcttaggtggtgtagtgttttggtgggtttatcttcaggggctttatttgatggttatggtgtaccgtctatatgcgacaccattt 50305285  T
Q  271 gtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||| |||| | | |||| ||||||||||||| | ||| | ||||||||||||||||||||    
T  50305284 gtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatatttgctgatt 50305223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 2392297 - 2392159
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||| ||||||||||||||||| |||||| |||| |||| || ||  | |||||||||||||||| ||||||||||| |||||||||| |||||| | |    
T  2392297 ttaggcggtgatgtgttttggtgggtttattttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 2392198  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatattt 324  Q
    ||| ||||||||||||| ||||||| |||||||||||||    
T  2392197 ataccttgcgtcttgcggggatgacgtttaataatattt 2392159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 2394060 - 2393922
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||| ||||||||||||||||| |||||| |||| |||| || ||  | |||||||||||||||| ||||||||||| |||||||||| |||||| | |    
T  2394060 ttaggcggtgatgtgttttggtgggtttattttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 2393961  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatattt 324  Q
    ||| ||||||||||||| ||||||| |||||||||||||    
T  2393960 ataccttgcgtcttgcggggatgacgtttaataatattt 2393922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 215 - 331
Target Start/End: Original strand, 50559959 - 50560076
Alignment:
Q  215 atcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatt 313  Q
    ||||||||||||||||||| | |||||||||| ||||| ||| ||||||||| |||||||| |||||| | |||||||||||| ||||||||||||| ||    
T  50559959 atcttcatgggttttgtttggtggttatggtgcaccgtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtt 50560058  T
Q  314 taataatatttgctgatt 331  Q
    |||||||||||| |||||    
T  50560059 taataatatttgttgatt 50560076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 331
Target Start/End: Original strand, 19176710 - 19176938
Alignment:
Q  107 gggtgttctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaa-ggtgtacgtcttaggtggtgatgtgtt 203  Q
    ||||||||||||||  |||||||||| ||||| | || ||||||||||||||| | ||| ||||||| ||   || ||  || ||||||||| |||||||    
T  19176710 gggtgttctttaggggtgagtagtgacgatggatggtggtggatactgtgtttactgtgcttgttttttttttggagtctgttttaggtggttatgtgtt 19176809  T
Q  204 ttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcg 302  Q
    |||||| |||| |||||| |||| || ||  |  ||||||||||||||| ||||||||||| |||||||||| |||||| | ||||  |||||||||||     
T  19176810 ttggtgggtttgtcttcaggggtatttttaggtcgttatggtgtaccgtctatatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgca 19176909  T
Q  303 aggatgacatttaataatatttgctgatt 331  Q
     | ||||| ||||||||||||||| ||||    
T  19176910 ggaatgacgtttaataatatttgccgatt 19176938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 31483167 - 31483312
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||| |||||||||||||||||||||||||| || |||| || ||  | |||||||||||||||| ||||||| ||| |||||||||| |||||  |||    
T  31483167 ttaggcggtgatgtgttttggtgagtttatctccaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgttttgttc 31483266  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||||||| | |||||   ||||||||||||||| ||||    
T  31483267 ataccttgcgtcttgtggggatggtgtttaataatatttgccgatt 31483312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 47235985 - 47236130
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||||||| |||||||| |||||||| || |||| || ||    ||||||||| |||||| ||||||||||| |||||||||| |||||| | |    
T  47235985 ttaggtggtgatgtattttggtgggtttatctccaggggtgtttttagatggttatggtataccgtctatatgcggcaccatttgtatcttgtttcgtcc 47236084  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||||||||  ||||| | ||||||||||||||||||||    
T  47236085 ataccttgcgtcttgcagggatggcgtttaataatatttgctgatt 47236130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 325
Target Start/End: Original strand, 21343633 - 21343773
Alignment:
Q  185 tcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcat 283  Q
    ||||||||||||||||||||||||| ||| ||||||| |||   ||||  | ||||||| |||||||| ||||||||||| |||||||||| |||||| |    
T  21343633 tcttaggtggtgatgtgttttggtgggtt-atcttcacgggccatgttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgt 21343731  T
Q  284 tcatatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
     |||| |||| |||||||  ||||||| ||||||||||||||    
T  21343732 ccataccttgtgtcttgccgggatgacgtttaataatatttg 21343773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 45164141 - 45164285
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| |||||||| || |||| || ||  | |||||||||||||||| ||||||||||| |||||||||| |||||  | |    
T  45164141 ttaggtggtgatgtgttttggtgggtttatctcca-gggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtcc 45164239  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||| ||||||| |||| |  ||||||||||||||| ||||    
T  45164240 ataccttgcatcttgcggggataatgtttaataatatttgccgatt 45164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 25506827 - 25506725
Alignment:
Q  224 ggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat-ctgtttcattcatatcttgcgtcttgcgaggatgacatttaataatat 322  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||||||  |||||  || |||||||| |||||||| ||||||  |||||||||||    
T  25506827 ggttttgatttggggttatggtgtaccgtctatatgcggcaccatttgtatattgttttgtttatatcttgggtcttgcggggatgatgtttaataatat 25506728  T
Q  323 ttg 325  Q
    |||    
T  25506727 ttg 25506725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 319
Target Start/End: Original strand, 43012619 - 43012796
Alignment:
Q  143 gtggatactgtgtttccagtgtttgtttt-gttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggtta 241  Q
    |||||||| |||||| || || ||||||| || |||| ||  || |||| ||||||||| |||||||| |||| |||||| | || || ||  | |||||    
T  43012619 gtggataccgtgtttacaatgcttgtttttgtgaaggagtctgttttagatggtgatgtcttttggtgggtttttcttcaggagtgtttttaggtggtta 43012718  T
Q  242 tggtgtaccgtttatatgcggcatcatttgtat-ctgtttcattcatatcttgcgtcttgcgaggatgacatttaataa 319  Q
    ||||||| ||| ||||||||||| |||||||||  |||||| |||||| |||||||||||| |||||||||||||||||    
T  43012719 tggtgtatcgtctatatgcggcaccatttgtatattgtttcgttcataccttgcgtcttgc-aggatgacatttaataa 43012796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 30352230 - 30352117
Alignment:
Q  190 ggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcata 288  Q
    |||||||||||||||||||| | ||||||||| |||| || ||  | |||||||||||||| | ||||||||||| |||||||||| |||||| | ||||    
T  30352230 ggtggtgatgtgttttggtgggcttatcttcaggggtgtttttaggtggttatggtgtaccttctatatgcggcaccatttgtatcttgtttcgtccata 30352131  T
Q  289 tcttgcgtcttgcg 302  Q
     |||||||||||||    
T  30352130 ccttgcgtcttgcg 30352117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 17551244 - 17551389
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgta-tctgtttcattc 285  Q
    ||||||||||||||||||||||| |||| | ||||  ||| || ||  | ||||||||||||| || ||||||||||| |||||||| | |||||| |||    
T  17551244 ttaggtggtgatgtgttttggtgggttttttttcagaggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtattttgtttcgttc 17551343  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| | ||| ||||||  |||| || ||||||||||||| ||||||    
T  17551344 ataccctgcatcttgcagggataacgtttaataatatttactgatt 17551389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 4463844 - 4463734
Alignment:
Q  222 tgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat-ctgtttcattcatatcttgcgtcttgcgaggatgacatttaataat 320  Q
    ||||||||| |||| |||||||||| ||||| ||||||||||| ||||||| |  |||||| | ||| |||||||||||| | || |||| |||||||||    
T  4463844 tgggttttgatttgtggttatggtgcaccgtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaataat 4463745  T
Q  321 atttgctgatt 331  Q
    |||||| ||||    
T  4463744 atttgccgatt 4463734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 21342642 - 21342732
Alignment:
Q  11 cagagatcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtttt 101  Q
    ||||| ||||||||||||| ||||||| ||||||||| ||| | |||||||||||||||||||   ||| |||||||| ||||| ||||||    
T  21342642 cagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtggctcgacttgggtgttgaagtctgagagtttt 21342732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 9583843 - 9583758
Alignment:
Q  191 gtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||||||||||||||||||| |||||| |||| |||| || ||  | |||||||||||| ||| ||||||||||| |||||||||||    
T  9583843 gtggtgatgtgttttggtgggtttattttcaagggtatttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatct 9583758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 37158659 - 37158732
Alignment:
Q  253 ttatatgcggcatcatttgtat-ctgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    |||||||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| | ||| |||||||||||    
T  37158659 ttatatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggcgttt-ataatatttgc 37158732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 2825899 - 2826213
Alignment:
Q  20 agaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgttct- 115  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||||| |||| |||||||| |||||||| | ||  ||||   ||||||||||||||||     
T  2825899 agaggttgtggaagctgcatgttcattcggttaggagcttttcgaaggtggttcagtttgggtgttgaagtttgggagttttattttgaggggtgttctc 2825998  T
Q  116 ttaggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggtgagttt 214  Q
    |  |||||||||||| ||||||  ||||||||||||| |||| ||| |||||||| |||||||||||  |||||||||| ||||||||||||  ||| ||    
T  2825999 tggggtgagtagtgacgatgggacgttgtggatactgcgtttacagggtttgtttctgttaaggtgtttgtcttaggtgatgatgtgttttg--gaggtt 2826096  T
Q  215 atcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatt 313  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||| | | |||| ||||||||||||   |||||| ||    
T  2826097 atcttca-gggttttgtttgggggttatggtgtaccgtatatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtt 2826195  T
Q  314 taataatatttgctgatt 331  Q
    ||||||||||||||||||    
T  2826196 taataatatttgctgatt 2826213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 31050629 - 31050314
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgtt 113  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||| ||||||| || ||| |||||||| ||||   |||   ||||||||||||||    
T  31050629 tcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtggctaagcttgggtgttgaagtctggctgttttattttgaggggtgtt 31050530  T
Q  114 cttt--aggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttg-ttttgttaaggtgtacgtcttaggtggtgatgtgttttggtga 210  Q
    | ||   |||||||||||| ||||| |  | ||||||  ||||||| ||||||||| || |||| |||||| |||||||||||||||||||||||| |||    
T  31050529 ccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtgtttgcttctgttgaggtgttcgtcttaggtggtgatgtgttttgatga 31050430  T
Q  211 gtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatga 309  Q
    | ||||||||| ||   |||| | | |||||||||||||||| |||||||| ||||||||||||| |||||| | ||||  | || ||||||| ||| ||    
T  31050429 g-ttatcttca-ggtgcttgtatggtggttatggtgtaccgtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacga 31050332  T
Q  310 catttaataatatttgct 327  Q
    | ||||||||||||||||    
T  31050331 cgtttaataatatttgct 31050314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 35341306 - 35341000
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgtt 113  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| | ||  ||||   ||||||||||||||    
T  35341306 tcgagaggttgtggaagctgcatgttcattcagttatgagcttttcgaatgtggctcagtttg-gtgttgaagtttgggagttttattttgaggggtgtt 35341208  T
Q  114 ct-ttaggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagt 212  Q
    || |  |||||||||||| ||||||| |||| ||||||||||||| |||||||||||||       |||     | ||||||||||||||| ||  | |     
T  35341207 ctctggggtgagtagtgacgatgggtggttgcggatactgtgtttacagtgtttgtttt-------tgt-----taaggtggtgatgtgttatg--gggg 35341122  T
Q  213 ttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgc--gaggatga 309  Q
    ||||||||| ||| |||||   |||||||||||||||||| |||||| |||| |||||||||| |||||| | ||||  |||||||||||  | ||||||    
T  35341121 ttatcttcaggggctttgtccgggggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatga 35341022  T
Q  310 catttaataatatttgctgatt 331  Q
    | |||||||||||||| |||||    
T  35341021 cgtttaataatatttgttgatt 35341000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 184 - 331
Target Start/End: Original strand, 4305991 - 4306136
Alignment:
Q  184 gtcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcat 283  Q
    |||||||||||||||||||||||||| | ||||| ||  || |||| ||  | |||||||||||||||| ||||||||||| ||||| ||||| |||| |    
T  4305991 gtcttaggtggtgatgtgttttggtgggattatcctc--ggatttttttaggtggttatggtgtaccgtctatatgcggcaccatttatatctttttcgt 4306088  T
Q  284 tcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||| |||||||||| || ||||||||||||||||||||||| ||||    
T  4306089 tcataccttgcgtcttccggggatgacatttaataatatttgccgatt 4306136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 8255247 - 8255403
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||  || ||  || ||||||||||||||||||| ||||||||||||    
T  8255247 ggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttattt-ggagtctgttttaggtggtgatgtgtttttgtgagtttatct 8255345  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||| | || || ||  | ||||||| |||||||| |||||||||||||||||||||||    
T  8255346 tcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatct 8255403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 8268665 - 8268821
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| ||  || ||  || ||||||||||||||||||| ||||||||||||    
T  8268665 ggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttattt-ggagtctgttttaggtggtgatgtgtttttgtgagtttatct 8268763  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||| | || || ||  | ||||||| |||||||| |||||||||||||||||||||||    
T  8268764 tcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatct 8268821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 315
Target Start/End: Original strand, 20464810 - 20465005
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||  || |||||||| |||||| ||| ||||||||| || | || |  || |||||||||||||| | |||||| ||||||||    
T  20464810 ggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttttgaagttt--gttttaggtggtgatgtatgttggtgggtttatct 20464907  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacattta 315  Q
    ||| |||| || ||  | |||||||||||||||| ||||| ||||| |||||||||| |||||| |||||| ||||| ||||| ||||||||| ||||    
T  20464908 tcaggggtgtttttaggtggttatggtgtaccgtctatatacggcaccatttgtatcttgtttctttcataccttgcatcttgtgaggatgacgttta 20465005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 7703024 - 7703118
Alignment:
Q  237 ggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||| |||| |||| |||||||| ||||||| ||||||||||||||| ||||    
T  7703024 ggttatggtgtaccgtctatatgcggcaccatttgtatctttttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccgatt 7703118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 27555725 - 27555579
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| ||||||||||| |||| || ||  | |||||||||||||| | |||||||||||  ||||||||| |||||| | |    
T  27555725 ttaggtggtgatgtgttttggtgggtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcacaatttgtatcttgtttcgtcc 27555626  T
Q  286 atatcttgcgtcttgc-gaggatgacatttaataatatttgctgatt 331  Q
    ||| |||||||||||| | ||||| | ||||||||||||||| ||||    
T  27555625 ataccttgcgtcttgcgggggatggcgtttaataatatttgccgatt 27555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 331
Target Start/End: Original strand, 35329302 - 35329439
Alignment:
Q  195 tgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttg 293  Q
    ||||||||||||||| |||||||||||||||| || ||  | |||||||||||||||| ||||||| ||| |||||||||| |||||| | |||| |||     
T  35329302 tgatgtgttttggtgggtttatcttcatgggtatttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccatacctta 35329401  T
Q  294 cgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||||||| ||||| | |||| |||||||||| ||||    
T  35329402 cgtcttgcggggatggcgtttactaatatttgccgatt 35329439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 331
Target Start/End: Complemental strand, 46698536 - 46698428
Alignment:
Q  224 ggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaataatat 322  Q
    |||||||| ||| |||||||||||||||| ||||||||||| |||||||||| ||||||   |||| |||||||||| |  ||||||| |||||||||||    
T  46698536 ggttttgtcttgtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatat 46698437  T
Q  323 ttgctgatt 331  Q
    |||||||||    
T  46698436 ttgctgatt 46698428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 30964724 - 30964863
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| |||||||| || | || || ||  | |||||||||||||||| |||||||  ||||||||||||| |||||| | |    
T  30964724 ttaggtggtgatgtgttttggtgggtttatctccaggagtgtttttaggtggttatggtgtaccgtctatatgcaacatcatttgtatcttgtttcgtcc 30964823  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    ||| ||||||||||||  |||||   ||||||||||||||    
T  30964824 ataccttgcgtcttgcagggatggtgtttaataatatttg 30964863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 325
Target Start/End: Complemental strand, 36689599 - 36689460
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||| |||||||||||||||||||||||||||||| |||| || ||  | |||||| ||||||||| ||||||||  | |||||||||| | |||| | |    
T  36689599 ttagatggtgatgtgttttggtgagtttatcttcaggggtgtttttaagtggttatagtgtaccgtctatatgcgataccatttgtatcttatttcgtcc 36689500  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    ||| || ||||||||||  ||||  |||||||||||||||    
T  36689499 atacctcgcgtcttgcggagatggtatttaataatatttg 36689460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 325
Target Start/End: Complemental strand, 30167352 - 30167218
Alignment:
Q  194 gtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcg--gcatcatttgtatct-gtttcattcatatc 290  Q
    |||||||||||||||| |||||||||||  ||| || ||    |||||| ||||||||| |||||     ||||||||||||||| ||||| | |||| |    
T  30167352 gtgatgtgttttggtgggtttatcttcagtggtatttttagatggttatagtgtaccgtctatattttttgcatcatttgtatcttgtttcgtccatacc 30167253  T
Q  291 ttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    |||||||||||||||||||| ||||||||||||||    
T  30167252 ttgcgtcttgcgaggatgacgtttaataatatttg 30167218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 49528408 - 49528462
Alignment:
Q  222 tgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||||||||| |||| |||| ||||||||||| ||||||||||| |||||||||||    
T  49528408 tgggttttgatttgtggttttggtgtaccgtctatatgcggcaccatttgtatct 49528462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 8705930 - 8705789
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat-ctgtttcattc 285  Q
    ||||||||||||||||||| |||     ||||||| |||| || ||  | |||||||||||||||| ||||||| ||| ||||||||| |||  || | |    
T  8705930 ttaggtggtgatgtgtttttgtgg----atcttcaagggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcctgcctcgtcc 8705835  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| || ||||||||   ||||||| ||||||||||||||| ||||    
T  8705834 atacctcgcgtcttgaagggatgacgtttaataatatttgccgatt 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 326
Target Start/End: Complemental strand, 11281511 - 11281379
Alignment:
Q  195 tgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttg 293  Q
    ||||||||||| ||| | |||||||||  ||| || ||  | ||||||||| |||||| ||||| | ||| ||||| |||| |||||| | |||||||||    
T  11281511 tgatgtgttttagtggggttatcttcagaggtgtttttaggtggttatggtataccgtctatatacagcaccatttatatcatgtttcgtccatatcttg 11281412  T
Q  294 cgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||||||| |  |||||| || ||||||||||||    
T  11281411 cgtcttgtggagatgacgttcaataatatttgc 11281379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 331
Target Start/End: Complemental strand, 52868866 - 52868760
Alignment:
Q  227 tttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgac-atttaataatattt 324  Q
    ||||||| | |||||||||||||||| |||| ||| || |||||||||| |  ||| |||||| ||| ||||||| || ||||||  |||||||||||||    
T  52868866 tttgtttggtggttatggtgtaccgtctatacgcgacaccatttgtatcttaattcgttcataccttacgtcttgtgaagatgacgttttaataatattt 52868767  T
Q  325 gctgatt 331  Q
    | |||||    
T  52868766 gatgatt 52868760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 9750116 - 9750192
Alignment:
Q  249 ccgtttatatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    |||| ||||||||||| ||||||||||| ||||| | || | || |||||||||| ||||||| ||||||||||||||    
T  9750116 ccgtctatatgcggcaccatttgtatcttgtttcgtccaaacct-gcgtcttgcggggatgacgtttaataatatttg 9750192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 6585043 - 6585318
Alignment:
Q  65 atgtggctcagtttgagtgttgaaatctgatagtttt---ttgaggggtgttcttt--aggtgagtagtgatgatgggttgttgtggatactgtgtttcc 159  Q
    ||||||||||| ||| |||||||| ||||  ||||||   |||||||||| | |||  ||||||||||||| |||| || |||||||||||||||||| |    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggttgtggatactgtgttttc 6585142  T
Q  160 agtgttt-gttt-tgttaaggtgtacgtcttaggtgg-tgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttat 256  Q
    ||||||| |||| ||||||||||| ||||||||| || |||||||||| ||||  |||||||||| ||||||||||| | |||||||||||||||| |||    
T  6585143 agtgttttgtttctgttaaggtgtccgtcttaggggggtgatgtgtttaggtggctttatcttcaggggttttgtttggtggttatggtgtaccgtctat 6585242  T
Q  257 atgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||| |||||||||| |||||| | |||  ||||| ||||||| ||||| | ||||||||||||||||||||    
T  6585243 atgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataatatttgctgatt 6585318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 331
Target Start/End: Original strand, 34391455 - 34391614
Alignment:
Q  173 ttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgt 272  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||| | |||||||||||| ||| |||||||||||| ||||||    
T  34391455 ttaaggtgttcgtcttaggtggtgatgtgttttggtgggtttatcttcaggggctttgtttggtggttatggtgtatcgtctatatgcggcattatttgt 34391554  T
Q  273 atc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||||| | |||| | |||||| |||| ||||||| ||||||||||||||||||||    
T  34391555 atcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatatttgctgatt 34391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 119 - 331
Target Start/End: Complemental strand, 31971995 - 31971784
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||  || || ||||| |||||| ||||| ||||||| ||  || ||  || ||||||||| ||||||||||||| ||||||||    
T  31971995 ggtgagtagtgacgatgggcggtggttgataccgtgtttacagtgcttgttttttt--ggagtttgttttaggtggttatgtgttttggtgggtttatct 31971898  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaat 317  Q
    ||| |||| || ||  | |||||||||||||||| ||||||||||| |||||||||| |||||| | |||| ||||||||||||| ||||| | ||||||    
T  31971897 tcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaat 31971798  T
Q  318 aatatttgctgatt 331  Q
    ||||||||| ||||    
T  31971797 aatatttgccgatt 31971784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 5860077 - 5859932
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| | ||||||| | |||| || ||  | |||||||||||||||| ||||||||||| |||||||||| |||||| | |    
T  5860077 ttaggtggtgatgtgttttggtgggattatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtcc 5859978  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||| ||||||||||| ||||||| ||||||||||||||| ||||    
T  5859977 atatcatgcgtcttgcggggatgacgtttaataatatttgccgatt 5859932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 119 - 331
Target Start/End: Complemental strand, 47325746 - 47325534
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||   |  |||||||||||||| ||||| ||||||| ||  |  ||  || ||||||||||||||||||||||| ||||||||    
T  47325746 ggtgagtagtgacgatgggcgatgatggatactgtgtttacagtgcttgtttttttttgaagtttgttttaggtggtgatgtgttttggtgggtttatct 47325647  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaat 317  Q
    ||| | || || ||  | |||||||||||||||| ||||||| ||| ||||||||||| ||||| | |||| |||||||||| |||||||||| ||||||    
T  47325646 tca-gagtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaat 47325548  T
Q  318 aatatttgctgatt 331  Q
    ||||||||| ||||    
T  47325547 aatatttgccgatt 47325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 324
Target Start/End: Complemental strand, 44353438 - 44353220
Alignment:
Q  107 gggtgttcttt--aggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttt 204  Q
    |||||||||||  ||||||||||||| |||||   || |||||||| |||||| ||||| ||| ||| ||  || ||  || ||||||||||||||||||    
T  44353438 gggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt--ggagtctgttttaggtggtgatgtgttt 44353341  T
Q  205 tggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcga 303  Q
    ||||| |||||||| ||||||| || ||  | |||||||||||||| | ||||||||||| |||||||||| |||||| | ||||  ||||||||||||     
T  44353340 tggtgggtttatctccatgggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcgg 44353241  T
Q  304 ggatgacatttaataatattt 324  Q
    ||||| | |||||||||||||    
T  44353240 ggatggcgtttaataatattt 44353220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 35745792 - 35745592
Alignment:
Q  19 gagaggttgtgaaagctgcatgttcattcagtttggagcttttcga---at-gtggctcagtttgagtgttgaaatctgatagtttt---ttgaggggtg 111  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||||   || ||||||||| ||| |||||||| |||||  |||||   ||||| ||||    
T  35745792 gagaggttgtggaagctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttgagaggtg 35745693  T
Q  112 ttctttagg--tgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttt-tgttaaggtgtacgtcttaggtggtgatgtgttttggt 208  Q
    |||||| ||  |||||||||| ||||||| |  ||||||  |||||||   |||||||||| |||||||||||  |||||||||||||||||||||||||    
T  35745692 ttctttgggggtgagtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttctgttaaggtgtctgtcttaggtggtgatgtgttttggt 35745593  T
Q  209 g 209  Q
    |    
T  35745592 g 35745592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 196 - 331
Target Start/End: Complemental strand, 42454519 - 42454383
Alignment:
Q  196 gatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgc 294  Q
    |||||||||||||| ||||||||||| || |||| ||  | ||||||||||||| || ||||||||||| |||||||| | |||||| |  |||||||||    
T  42454519 gatgtgttttggtgggtttatcttcaaggatttttttaggtggttatggtgtactgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgc 42454420  T
Q  295 gtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||| ||||||  ||||||||||||||||||||    
T  42454419 gtcttgcggggatgatgtttaataatatttgctgatt 42454383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 3867405 - 3867541
Alignment:
Q  190 ggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcata 288  Q
    |||||||||||||||||||||||||||||||| |||| || || ||  ||||||||||||||| |||||| |||| |||||||||| |||||| |  |||    
T  3867405 ggtggtgatgtgttttggtgagtttatcttcaggggtgtttttatgttgttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcaata 3867504  T
Q  289 tcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
     ||| ||||||||| ||||||  |||||||||||||||    
T  3867505 ccttacgtcttgcg-ggatgaagtttaataatatttgc 3867541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 187 - 325
Target Start/End: Complemental strand, 3419191 - 3419054
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||| |||||||||||||||||||||||| | || || ||  | |||||||||||||||  | ||||||||| | |||||||| |||||| | |    
T  3419191 ttaggtggtgttgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccg--tctatgcggcaacgtttgtatcttgtttcgtcc 3419094  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    ||| ||||||||||||| ||||||| ||||||||||||||    
T  3419093 ataccttgcgtcttgcggggatgacgtttaataatatttg 3419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 11378879 - 11378775
Alignment:
Q  222 tgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattcatatcttgcgtcttgcgaggatgacatttaataata 321  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||  ||| | |||| ||||||||||||| || || | ||||||||||    
T  11378879 tgggttttgatttgtggttatggtgtaccgtttatatgcggcatcatctgtatcttattcgtccataccttgcgtcttgcggggttggcgtttaataata 11378780  T
Q  322 tttgc 326  Q
    |||||    
T  11378779 tttgc 11378775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 37795283 - 37795423
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||||| |||||| ||| |||||||||||||||| || ||  | |||||||||||||||||||   ||| || |||||||||| |||||| | |    
T  37795283 ttaggtggtgatatgtttttgtgggtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtcc 37795382  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||| ||||||||||| | ||| ||| |||||||||||||||    
T  37795383 ataccttgcgtcttgtggggacgacgtttaataatatttgc 37795423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 37795611 - 37795751
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||||| |||||| ||| |||||||||||||||| || ||  | |||||||||||||||||||   ||| || |||||||||| |||||| | |    
T  37795611 ttaggtggtgatatgtttttgtgggtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtcc 37795710  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||| ||||||||||| | ||| ||| |||||||||||||||    
T  37795711 ataccttgcgtcttgtggggacgacgtttaataatatttgc 37795751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 34390075 - 34390214
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcagtttgagtgttgaaatctgatagtt---ttttgaggggtgtt 113  Q
    ||||||||||||| |||||||||||||||||  || |||||||||| |||||||||||  ||| |||||| | ||||  ||||   ||||||||||||||    
T  34390075 tcgagaggttgtggaagctgcatgttcattcgattaggagcttttcaaatgtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgtt 34390174  T
Q  114 ctttagg--tgagtagtgatgatgggttgttgtggatact 151  Q
    |||| ||  |||||||||| ||||||| |||| |||||||    
T  34390175 ctttggggatgagtagtgacgatgggtggttgcggatact 34390214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 10244467 - 10244612
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||| |||   ||||||||| |||| || ||  | ||||||||||||| || ||||||||||| |||||||||| |||||| | |    
T  10244467 ttaggtggtgatgtgttttcgtggacttatcttcaggggtgtttttaggtggttatggtgtactgtctatatgcggcaccatttgtatcttgtttcgtcc 10244566  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||||||||||||  ||||   ||||||||||||||| ||||    
T  10244567 ataccttgcgtcttgcggagatggagtttaataatatttgccgatt 10244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 25161096 - 25161240
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| |||||||| || |||| || ||  | |||||||||||||||| ||||| ||||| |||||| ||| |||||| |||    
T  25161096 ttaggtggtgatgtgttttggtgggtttatctcca-gggtgtttttaggtggttatggtgtaccgtctatatacggcaccatttgcatcttgtttcgttc 25161194  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||   |||| || ||||||| ||||||||||||||| ||||    
T  25161195 ataccttaaatcttacggggatgacgtttaataatatttgccgatt 25161240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 48161808 - 48161690
Alignment:
Q  213 ttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctgtttcattcatatcttgcgtcttgcgaggatgacat 312  Q
    ||||||||| ||| ||||||  | ||||||||||| |||| |||||||||||  |||||||| |  ||| | ||||||||| |||||||  ||||||| |    
T  48161808 ttatcttcaggggctttgttaggtggttatggtgtgccgtctatatgcggcactatttgtattttgttcgtccatatcttgtgtcttgcagggatgacgt 48161709  T
Q  313 ttaataatatttgctgatt 331  Q
    |||||||||||||||||||    
T  48161708 ttaataatatttgctgatt 48161690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 331
Target Start/End: Complemental strand, 33434625 - 33434480
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||||||||||| |||||| | || |||| || ||  | |||||||||||||||| ||||| | | | |||||||||| || ||| | |    
T  33434625 ttaggtggtgatgtgttttggtgggtttatttccaggggtgtttttaggtggttatggtgtaccgtctatatacagaaccatttgtatcttgcttcgtcc 33434526  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||| ||||| ||||| | ||||||||||||||| ||||    
T  33434525 ataccttgcgtattgcggggatggcgtttaataatatttgccgatt 33434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 38306547 - 38306636
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||||||||||||||||||||||  ||||||||| | |||| || ||  | |||||||||||||||| ||||||||||| |||||||||||    
T  38306547 ttaggtggtgatgtgttttggttggtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatct 38306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 326
Target Start/End: Complemental strand, 41089537 - 41089400
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||| |||||||||||||||  ||||||||||||||| || ||  | |||||||||||||||| ||||||||||| || ||||||| |||||| | |    
T  41089537 ttaggtgatgatgtgttttggtggatttatcttcatgggtgtttttaggtggttatggtgtaccgtctatatgcggcacca-ttgtatcttgtttcgtcc 41089439  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||| |||  |||||||   |||| |||||||||||||||||    
T  41089438 atacctt--gtcttgcagagatggcatttaataatatttgc 41089400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 3419450 - 3419321
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    |||||||||| |||||||||||||||||||||||| | || || ||  | |||||||||||||||  | ||||||||| | |||||||| |||||| | |    
T  3419450 ttaggtggtgttgtgttttggtgagtttatcttcaggagtgtttttaggtggttatggtgtaccg--tctatgcggcaacgtttgtatcttgtttcgtcc 3419353  T
Q  286 atatcttgcgtcttgcgaggatgacatttaat 317  Q
    ||| ||||||||||||| ||||| | ||||||    
T  3419352 ataccttgcgtcttgcggggatggcgtttaat 3419321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 274
Target Start/End: Complemental strand, 40726379 - 40726212
Alignment:
Q  107 gggtgttcttta-ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgtttt 205  Q
    |||||||||||  |||||||||||||||| ||  || |||||||| |||||| | ||| ||| ||| ||  || ||  || ||||||||| |||||||||    
T  40726379 gggtgttctttgtggtgagtagtgatgataggcggtggtggataccgtgtttaccgtgcttgattttttt-ggagtctgttttaggtggtaatgtgtttt 40726281  T
Q  206 ggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtat 274  Q
    |||| |||||||| || |||| || ||  | |||||||||||||||| ||||||  |||||||||||||    
T  40726280 ggtgggtttatctccaggggtgtttttaggtggttatggtgtaccgtctatatgtagcatcatttgtat 40726212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 8745264 - 8745322
Alignment:
Q  17 tcgagaggttgtgaaagctgcatgttcattcagtttggagcttttcgaatgtggctcag 75  Q
    ||||||||||||| |||||||||| || ||||| | ||||||||||| |||||||||||    
T  8745264 tcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcag 8745322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 40726186 - 40726140
Alignment:
Q  285 catatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  40726186 cataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 43482192 - 43482331
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctg-tttcattc 285  Q
    |||||||||| |||||||| ||| ||||||||  |||| | || ||  | |||| ||||||||||| | ||||| |||  ||||||||||  |||| | |    
T  43482192 ttaggtggtgttgtgtttttgtgggtttatctcaatggatgtttttaggtggttgtggtgtaccgtctgtatgcagcactatttgtatcttatttcgtcc 43482291  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||| |||||||||  || ||||||| |||||||||||||||    
T  43482292 ataccttgcgtcta-cggggatgacgtttaataatatttgc 43482331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 331
Target Start/End: Original strand, 18593463 - 18593674
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||  || |||||||| |||||| ||||| ||||||| ||  || ||  || ||||||||||||||||||||| | ||||||||    
T  18593463 ggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgttttttt--ggagtttgtgttaggtggtgatgtgttttggcgggtttatct 18593560  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaat 317  Q
    ||| |||| || ||  | |||||||||||||||| ||||||||||| ||| | |||| |||||| | |||| ||||| ||||||| ||||||| ||||||    
T  18593561 tcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatgacgtttaat 18593660  T
Q  318 aatatttgctgatt 331  Q
    ||||||||| ||||    
T  18593661 aatatttgccgatt 18593674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 34378386 - 34378525
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattc 285  Q
    ||||||||||||||||||| ||| ||||||||||| |||| || ||    |||||||||||||||| ||||||||||| ||||||||||| || || | |    
T  34378386 ttaggtggtgatgtgtttttgtgggtttatcttcaggggtgtttttagatggttatggtgtaccgtctatatgcggcaccatttgtatctcgtctcgtcc 34378485  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttg 325  Q
    ||  |||||||||||||  |||| | ||||||||||||||    
T  34378486 atgccttgcgtcttgcggagatggcgtttaataatatttg 34378525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 331
Target Start/End: Complemental strand, 7161877 - 7161663
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgtttt-gttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatc 217  Q
    |||||||||||| | ||||| || ||||| |  |||||| ||||| ||||||| || |||| ||  || |||||| |||||||||||||||| ||||||     
T  7161877 ggtgagtagtgacgttgggtggtggtggaaatcgtgtttacagtgcttgtttttgtgaaggagtctgttttaggtagtgatgtgttttggtgggtttata 7161778  T
Q  218 ttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctg-tttcattcatatcttgcgtcttgcgaggatgacatttaa 316  Q
    |||| |||| || ||  | | |||||||||||||| |||||||  ||  ||||||||||  |||| | |||||||||||||||| | ||| ||| |||||    
T  7161777 ttcaggggtgtttttaggtgattatggtgtaccgtctatatgctacactatttgtatcttatttcgtccatatcttgcgtcttgtggggaagacgtttaa 7161678  T
Q  317 taatatttgctgatt 331  Q
    |||||||||| ||||    
T  7161677 taatatttgccgatt 7161663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 331
Target Start/End: Original strand, 698658 - 698799
Alignment:
Q  191 gtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatat 289  Q
    ||||||||||| ||||||  ||||||||||| |||| || ||  | |||||| ||||||||| ||||||||||| |||||||||| | |||||| ||||     
T  698658 gtggtgatgtggtttggtaggtttatcttcaagggtgtttttaggtggttatagtgtaccgtctatatgcggcaccatttgtatcatatttcatccatac 698757  T
Q  290 cttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||||   |||| | ||||||||||||||||||||    
T  698758 cttacgtcttgcagagatgtcgtttaataatatttgctgatt 698799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 276
Target Start/End: Original strand, 29087699 - 29087854
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||  || ||| |||| |||||| ||||| ||||||| ||  || ||  || ||||||| ||||||||||||||| ||||||||    
T  29087699 ggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgcttgttttttt--ggagtctgttttaggtgctgatgtgttttggtgggtttatct 29087796  T
Q  219 tcatgggttttgttttgg-ggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||| ||||| | ||| || ||||||| |||||||| ||||||||||| |||||||||||    
T  29087797 tca-gggttgtttttaggtggttatgatgtaccgtctatatgcggcaccatttgtatct 29087854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 5656887 - 5656749
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||  |||||||||||  |||||||| | | || || ||  | ||||||  |||||||| |||||||||||||||||||||| | |||| |||    
T  5656887 ttaggtggtggcgtgttttggtggatttatcttaaggtgtgtttttaggtggttatcatgtaccgtctatatgcggcatcatttgtatcttatttcgttc 5656788  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatattt 324  Q
    ||| |||||||||||||  |||| | |||||||||||||    
T  5656787 ataccttgcgtcttgcggtgatggcgtttaataatattt 5656749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 7452925 - 7453020
Alignment:
Q  237 ggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||||||||||| ||||||||||| |||||||||| || ||  | |||| ||||||||||||  ||||||  ||||||||||||||| ||||    
T  7452925 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgccgatt 7453020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 18313393 - 18313310
Alignment:
Q  242 tggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaataatattt 324  Q
    ||||||||||| ||||||||||| |||||| ||| |||||||| |||| |||||||||| |  | ||||| |||||||||||||    
T  18313393 tggtgtaccgtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatattt 18313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 19205 - 19345
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttgg--ggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcat 283  Q
    |||||||||||||| |||||||| |||||||||||  | |||| ||| ||  |||||||||||||||| ||||||||||| |||||||||| |||||| |    
T  19205 ttaggtggtgatgtattttggtgggtttatcttca--gattttttttaggtgggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgt 19302  T
Q  284 tcatatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
     |||| | ||||||||||||||||||| |||||||||||||||    
T  19303 ccataccatgcgtcttgcgaggatgacgtttaataatatttgc 19345  T

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Target: scaffold0343 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 325
Target Start/End: Original strand, 5926 - 6131
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgag-tttatc 217  Q
    |||||||||||||||||||  || ||||||||  ||||| | ||| ||||||| || | || |   | ||||||||||||||||||| ||| | ||||||    
T  5926 ggtgagtagtgatgatgggaggtggtggataccatgtttacggtgcttgtttttttgaagtct---ttttaggtggtgatgtgtttttgtggggtttatc 6022  T
Q  218 ttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaa 316  Q
    ||||  ||| || ||  | ||||||| |||| ||| ||||| ||||| ||||||||||| || || |||||||||||||||||||| ||||||| |||||    
T  6023 ttcagaggtgtttttaggtggttatgatgtaacgtctatatacggcaccatttgtatcttgtctcgttcatatcttgcgtcttgcggggatgacgtttaa 6122  T
Q  317 taatatttg 325  Q
    |||||||||    
T  6123 taatatttg 6131  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 3254244 - 3254389
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct-gtttcattc 285  Q
    |||||||||||||| |||||||| |||||| |||| |||| || ||  | || ||||||||||  | ||||| ||||| ||||||||||| ||||| | |    
T  3254244 ttaggtggtgatgtattttggtgggtttattttcaggggtgtttttaggtggctatggtgtactatctatatacggcaccatttgtatcttgtttcgtcc 3254343  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| ||||||||||||| ||||||| ||||||||||||||| ||||    
T  3254344 ataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 15944286 - 15944431
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatctgtttc-attc 285  Q
    ||||||||||||||||||||||| |||||| |||| |||| || ||  | | |||||||||||||| |||||||| || |||||||||||  |||  | |    
T  15944286 ttaggtggtgatgtgttttggtgggtttatattcaggggtatttttaggtgtttatggtgtaccgtctatatgcgacaccatttgtatcttcttctgtcc 15944385  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||| |||||||||| |  ||||| | ||||||||||||||| ||||    
T  15944386 ataccttgcgtcttacagggatggcgtttaataatatttgccgatt 15944431  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 324
Target Start/End: Original strand, 10542052 - 10542255
Alignment:
Q  119 ggtgagtagtgatgatgggttgttgtggatactgtgtttccagtgtttgttttgttaaggtgtacgtcttaggtggtgatgtgttttggtgagtttatct 218  Q
    |||||||||||| ||||||  || |||||||| || |||  |||| ||||||| ||  || ||  || |||||||||| |||  |||| || ||||||||    
T  10542052 ggtgagtagtgacgatgggcggtggtggataccgtatttaaagtgcttgttttttt--ggagtttgttttaggtggtggtgtaatttgatgggtttatct 10542149  T
Q  219 tcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattcatatcttgcgtcttgcgaggatgacatttaat 317  Q
    ||| |||| || ||  | |||||||||||| ||| ||||||||||| | |||||||| |||||| |||||||||||| ||||||| ||||| |  |||||    
T  10542150 tcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccttttgtatcttgtttcgttcatatcttgcatcttgcg-ggatggcgcttaat 10542248  T
Q  318 aatattt 324  Q
    |||||||    
T  10542249 aatattt 10542255  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 15132573 - 15132489
Alignment:
Q  248 accgtttatatgcggcatcatttgtatct-gtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    ||||| ||||| ||||||||||||||||| ||||  | |||| ||| |||||||||| |||| | ||||||||||||||||||||    
T  15132573 accgtctatatacggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgatt 15132489  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 33697854 - 33697802
Alignment:
Q  224 ggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatct 276  Q
    ||||||| |||| |||||||||||||||| ||||||||||| |||||||||||    
T  33697854 ggttttgatttgtggttatggtgtaccgtctatatgcggcaccatttgtatct 33697802  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 3117781 - 3117921
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||| ||||||  |||||||||    ||| || ||  | |||||||||||| ||| ||||||| ||| |||||||||| | |||| | |    
T  3117781 ttaggtggtgatgtggtttggtaggtttatctttggaggtgtttttaggtggttatggtgtagcgtctatatgctgcaccatttgtatcttatttcgtcc 3117880  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgc 326  Q
    ||| ||| ||||||||  | ||||| |||||||||||||||    
T  3117881 ataccttacgtcttgcaggaatgacgtttaataatatttgc 3117921  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 14663414 - 14663481
Alignment:
Q  259 gcggcatcatttgtatctgtttcattcatatcttgcgtcttgcgaggatgacatttaataatatttgct 327  Q
    |||||| |||||||||||  ||| | |||| ||| |||||||| |||||||| ||||||||||||||||    
T  14663414 gcggcagcatttgtatcttgttcgtccatacctttcgtcttgc-aggatgacgtttaataatatttgct 14663481  T

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Target: scaffold0434 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 2467 - 2353
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||||||||||| ||||||| ||||||||||| |||| || ||  | |||||||||||||||| ||||||||||| ||| |||||| |||||| | |    
T  2467 ttaggtggtgatgtggtttggtgggtttatcttcaagggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatctgtatcttgtttcgtcc 2368  T
Q  286 atatcttgcgtcttg 300  Q
    ||| |||||||||||    
T  2367 ataccttgcgtcttg 2353  T

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Target: scaffold0085 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 48622 - 48767
Alignment:
Q  187 ttaggtggtgatgtgttttggtgagtttatcttcatgggttttgttttggggttatggtgtaccgtttatatgcggcatcatttgtatc-tgtttcattc 285  Q
    ||||||| ||||||||||||||  | ||||||| | |||| || ||  | |||||||||||||||| ||||||||||| |||||||||| |||||  | |    
T  48622 ttaggtgatgatgtgttttggtaggattatctttaagggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtcc 48721  T
Q  286 atatcttgcgtcttgcgaggatgacatttaataatatttgctgatt 331  Q
    |||||||| |||||||| ||| ||| || |||||||||||| ||||    
T  48722 atatcttgtgtcttgcggggaggacgttgaataatatttgcggatt 48767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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