View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_35 (Length: 315)
Name: NF17668_high_35
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1717321 - 1717024
Alignment:
| Q |
1 |
tacataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatccttgccaataatagttaac |
100 |
Q |
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| T |
1717321 |
tacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaataccaaatccttgccaataatagttaac |
1717222 |
T |
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| Q |
101 |
tttattgataattttattagagatcatgttatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtat |
200 |
Q |
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| T |
1717221 |
tttattgataattttattagagatcatattatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtat |
1717122 |
T |
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| Q |
201 |
agaaggggcgcctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaat |
298 |
Q |
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| T |
1717121 |
acaaggggcacctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaat |
1717024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 298
Target Start/End: Complemental strand, 1738598 - 1738430
Alignment:
| Q |
130 |
tatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaa |
229 |
Q |
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| T |
1738598 |
tatatattgaggatatctaaatgattttacttttctattttggtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaa |
1738499 |
T |
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| Q |
230 |
gatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaat |
298 |
Q |
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| T |
1738498 |
gatatgtccaaacacaaatggatgtatattctcgtgcaacatttggatgggctttttggtcctataaat |
1738430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 1753662 - 1753576
Alignment:
| Q |
212 |
ctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaat |
298 |
Q |
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| T |
1753662 |
ctatgcaagactaccaaagatatggccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaat |
1753576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 1738816 - 1738727
Alignment:
| Q |
3 |
cataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--aaccaaatccttgccaat |
90 |
Q |
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| T |
1738816 |
cataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgccaat |
1738727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 1748671 - 1748591
Alignment:
| Q |
3 |
cataagaaatgatagagcatgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatcct |
83 |
Q |
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| T |
1748671 |
cataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcct |
1748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 1748381 - 1748320
Alignment:
| Q |
237 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaat |
298 |
Q |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaat |
1748320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 1753965 - 1753919
Alignment:
| Q |
25 |
gatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaa |
71 |
Q |
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| T |
1753965 |
gatcttagcggcgtctcttcaacaaacgctcttagttttgtaggtaa |
1753919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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