View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_high_39 (Length: 303)

Name: NF17668_high_39
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_high_39
NF17668_high_39
[»] chr2 (2 HSPs)
chr2 (8-289)||(7859158-7859437)
chr2 (193-240)||(16549174-16549222)
[»] chr8 (3 HSPs)
chr8 (9-152)||(10380394-10380537)
chr8 (64-149)||(5591620-5591705)
chr8 (179-227)||(34255965-34256013)
[»] chr4 (8 HSPs)
chr4 (40-142)||(3482931-3483033)
chr4 (76-146)||(3501873-3501943)
chr4 (64-151)||(12743276-12743363)
chr4 (40-98)||(3517283-3517341)
chr4 (179-227)||(5872476-5872524)
chr4 (63-111)||(33175501-33175549)
chr4 (63-111)||(33176175-33176223)
chr4 (179-227)||(52094821-52094869)
[»] chr1 (5 HSPs)
chr1 (16-146)||(33094171-33094301)
chr1 (64-149)||(28222769-28222854)
chr1 (64-138)||(31657950-31658024)
chr1 (189-247)||(33094340-33094398)
chr1 (88-149)||(3157398-3157459)
[»] chr3 (7 HSPs)
chr3 (56-146)||(30844883-30844973)
chr3 (58-119)||(20628855-20628916)
chr3 (64-149)||(22834356-22834441)
chr3 (179-214)||(5259781-5259816)
chr3 (179-214)||(37407363-37407398)
chr3 (76-149)||(7763006-7763079)
chr3 (168-256)||(30844992-30845079)
[»] chr7 (1 HSPs)
chr7 (161-214)||(3903915-3903967)
[»] chr6 (3 HSPs)
chr6 (179-227)||(30444022-30444070)
chr6 (179-227)||(5408528-5408576)
chr6 (179-227)||(5412853-5412901)
[»] chr5 (3 HSPs)
chr5 (87-146)||(18467490-18467549)
chr5 (76-149)||(42427791-42427864)
chr5 (179-227)||(29721036-29721084)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 7859158 - 7859437
Alignment:
Q  8 ttctacgtaatgcacataataagggtatatttttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaa 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7859158 ttctacgtaatgcacagaataagggtatatttttgtcttcatcctcttttttcatttcaatgttcatcaaatcatcaaagattttgttgaattccgtcaa 7859257  T
Q  108 ttgttctgtgatggtttttgactccaccatcctaaatgaatatatannnnnnngttttaggaattgtcttttgagtcaaagacttggtcatatacaacga 207  Q
    ||||| |||||||||||||||||||||||||||||| ||||| ||        ||||||||||||||| |||||| |||||||||| || ||||||||||    
T  7859258 ttgttttgtgatggtttttgactccaccatcctaaaggaatagat-tttttttgttttaggaattgtc-tttgagccaaagacttgatcgtatacaacga 7859355  T
Q  208 ctccaaccttaacgacatcgtcgtcacagttgtgtccttcgtgacttctctcnnnnnnnttatccaaaatataagacaatga 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||    
T  7859356 ctccaaccttaacgacatcgtcgtcacagttgtgtccttcgtgacttctcccaaaaaaattatccaaaatataagacaatga 7859437  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 16549222 - 16549174
Alignment:
Q  193 ggtcatatacaacgactccaacct-taacgacatcgtcgtcacagttgt 240  Q
    |||||||||||||||||||||| |  ||| |||||||||||||||||||    
T  16549222 ggtcatatacaacgactccaacttcgaacaacatcgtcgtcacagttgt 16549174  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 10380394 - 10380537
Alignment:
Q  9 tctacgtaatgcacataataagggtatatttttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaat 108  Q
    |||| |||||||||| |||||| | | ||  |||||||| |||||  | || | ||||||||||| |||||||| ||||||||||||||||| || ||||    
T  10380394 tctaagtaatgcacacaataagagcagatcattgtcttcgtccttaatgtttacttcaatgttcaccaaatcatcaaagattttgttgaattgcgccaat 10380493  T
Q  109 tgttctgtgatggtttttgactccaccatcctaaatgaatatat 152  Q
    || | | |||||| |||||||||||||||||  ||||| |||||    
T  10380494 tgctttatgatggcttttgactccaccatcccgaatgagtatat 10380537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 5591705 - 5591620
Alignment:
Q  64 tcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatgaata 149  Q
    |||||||||  |||||||| ||  ||||||||||| ||||||||||| ||||| | ||| ||| ||||||||||| | ||||||||    
T  5591705 tcaatgttctccaaatcatcaagaattttgttgaactccgtcaattgctctgtcacggtctttaactccaccatcttgaatgaata 5591620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 34255965 - 34256013
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcg 227  Q
    |||| ||||||||||||||||||||||||||||||| || || ||||||    
T  34255965 tgagccaaagacttggtcatatacaacgactccaactttgaccacatcg 34256013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 3483033 - 3482931
Alignment:
Q  40 ttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcc 139  Q
    |||||||||||||   |||||| ||||||| ||| |||||||| ||  ||||||||||| ||  | ||||| | ||||||||||||||||||||||||||    
T  3483033 ttgtcttcatcctcaattttcacttcaatgatcaccaaatcatcaagaattttgttgaactcgattaattgctttgtgatggtttttgactccaccatcc 3482934  T
Q  140 taa 142  Q
    |||    
T  3482933 taa 3482931  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 3501943 - 3501873
Alignment:
Q  76 aaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatga 146  Q
    ||||||| || |||||||||||| |  |||||||| |||||||||| |||||| ||||||||| |||||||    
T  3501943 aaatcatcaaggattttgttgaactttgtcaattgctctgtgatggcttttgattccaccatcttaaatga 3501873  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 12743276 - 12743363
Alignment:
Q  64 tcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatgaatata 151  Q
    |||||||||  |||||||| ||||||||||||||| ||||| ||||| ||  | | ||| ||||||||||||||| | ||||| ||||    
T  12743276 tcaatgttctccaaatcatcaaagattttgttgaactccgttaattgctccatcacggtctttgactccaccatcttgaatgagtata 12743363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 3517341 - 3517283
Alignment:
Q  40 ttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattttgttgaa 98  Q
    |||||||||||||   |||||| ||||||||||| |||||||| || ||||||||||||    
T  3517341 ttgtcttcatcctaaattttcacttcaatgttcaccaaatcatcaaggattttgttgaa 3517283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 5872524 - 5872476
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcg 227  Q
    |||| ||||||||||||||||| ||||||||||||| || || ||||||    
T  5872524 tgagccaaagacttggtcatatgcaacgactccaactttgaccacatcg 5872476  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 33175549 - 33175501
Alignment:
Q  63 ttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgt 111  Q
    ||||||||| | |||||||| ||  ||||||||||||||||||||||||    
T  33175549 ttcaatgtttaccaaatcatcaataattttgttgaattccgtcaattgt 33175501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 33176223 - 33176175
Alignment:
Q  63 ttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgt 111  Q
    ||||||||| | |||||||| ||  ||||||||||||||||||||||||    
T  33176223 ttcaatgtttaccaaatcatcaataattttgttgaattccgtcaattgt 33176175  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 52094821 - 52094869
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcg 227  Q
    |||| ||||||||||||||||||||| ||||||||| || || ||||||    
T  52094821 tgagccaaagacttggtcatatacaatgactccaactttgaccacatcg 52094869  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 33094171 - 33094301
Alignment:
Q  16 aatgcacataataagggtatatttttgtcttcatcctttgttttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctg 115  Q
    |||||| |||| ||| ||||| ||||||||||||| |     |||| || |||||||  |||||||| || |||||||||||| |  |||||||| | ||    
T  33094171 aatgcatataaaaagagtataattttgtcttcatcttcaaaattcactttaatgttctccaaatcattaaggattttgttgaacttagtcaattgctttg 33094270  T
Q  116 tgatggtttttgactccaccatcctaaatga 146  Q
    |||||| ||||||||||||||| ||||||||    
T  33094271 tgatggattttgactccaccattctaaatga 33094301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 28222769 - 28222854
Alignment:
Q  64 tcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatgaata 149  Q
    |||||||||  |||||||| || |||||||||||| || |||||||| ||||| | ||| ||||||||||||||| | ||||||||    
T  28222769 tcaatgttctccaaatcatcaaggattttgttgaactctgtcaattgctctgtcacggtctttgactccaccatcttgaatgaata 28222854  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 31658024 - 31657950
Alignment:
Q  64 tcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatc 138  Q
    |||||||||  |||||||| || |||||||||||| ||||| ||||| ||||| | ||| |||||||||||||||    
T  31658024 tcaatgttctccaaatcatcaaggattttgttgaactccgttaattgctctgtcacggtctttgactccaccatc 31657950  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 33094340 - 33094398
Alignment:
Q  189 acttggtcatatacaacgactccaaccttaacgacatcgtcgtcacagttgtgtccttc 247  Q
    ||||||||||||| || |||||||||||| || ||||||| |||||| |||| ||||||    
T  33094340 acttggtcatatataaagactccaaccttgaccacatcgttgtcacatttgtctccttc 33094398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 3157459 - 3157398
Alignment:
Q  88 attttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatgaata 149  Q
    ||||||||||| ||||||||||| || || | ||| ||||||||||||||| | ||||||||    
T  3157459 attttgttgaactccgtcaattgctccgtcacggtctttgactccaccatcttgaatgaata 3157398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 30844883 - 30844973
Alignment:
Q  56 ttttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatga 146  Q
    |||||| |||||||| || |||||||| || |||||||||||| |  |||||||| ||| |||||||||| || |||||||| || |||||    
T  30844883 ttttcacttcaatgtgcaccaaatcatcaaggattttgttgaactttgtcaattgctctatgatggttttagattccaccattctgaatga 30844973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 20628916 - 20628855
Alignment:
Q  58 ttcatttcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgat 119  Q
    |||| ||||||||||| |||||||| || |||||||||||| ||||||||||| ||| ||||    
T  20628916 ttcacttcaatgttcaacaaatcatcaatgattttgttgaactccgtcaattgctctatgat 20628855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 22834356 - 22834441
Alignment:
Q  64 tcaatgttcatcaaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatgaata 149  Q
    |||||||||  |||||||| ||  ||||||||||| ||||||||||| ||||| | ||| ||| ||||||||||| | ||||||||    
T  22834356 tcaatgttctccaaatcatcaagaattttgttgaactccgtcaattgctctgtcacggtctttaactccaccatcttgaatgaata 22834441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 5259781 - 5259816
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaac 214  Q
    |||| |||||||||||||||||||||||||||||||    
T  5259781 tgagccaaagacttggtcatatacaacgactccaac 5259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 37407398 - 37407363
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaac 214  Q
    |||| |||||||||||||||||||||||||||||||    
T  37407398 tgagccaaagacttggtcatatacaacgactccaac 37407363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 7763079 - 7763006
Alignment:
Q  76 aaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatgaata 149  Q
    ||||||| || |||||||||||| ||||| ||||| ||  | | ||| ||||||||||||||| ||||||||||    
T  7763079 aaatcatcaaggattttgttgaactccgttaattgctccatcacggtctttgactccaccatcttaaatgaata 7763006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 30844992 - 30845079
Alignment:
Q  168 gaattgtcttttgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcgtcgtcacagttgtgtccttcgtgacttct 256  Q
    ||||||||| | ||| ||| |||||||| |||||||||||||||||||||  | ||||| ||| |||| |||| ||||||  |||||||    
T  30844992 gaattgtctat-gagccaatgacttggttatatacaacgactccaacctttcccacatcatcgccacacttgtctccttcacgacttct 30845079  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 3903915 - 3903967
Alignment:
Q  161 gttttaggaattgtcttttgagtcaaagacttggtcatatacaacgactccaac 214  Q
    ||||||||||||||||   ||||||||||||||||||||||||| |||||||||    
T  3903915 gttttaggaattgtctag-gagtcaaagacttggtcatatacaatgactccaac 3903967  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 30444070 - 30444022
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcg 227  Q
    |||| ||||||||||||||||||||||||||||||| || || ||||||    
T  30444070 tgagccaaagacttggtcatatacaacgactccaactttgaccacatcg 30444022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 5408528 - 5408576
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcg 227  Q
    |||| ||||||||| ||||||||||||||||||||| || || ||||||    
T  5408528 tgagccaaagactttgtcatatacaacgactccaactttgaccacatcg 5408576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 5412853 - 5412901
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcg 227  Q
    |||| ||||||||| ||||||||||||||||||||| || || ||||||    
T  5412853 tgagccaaagactttgtcatatacaacgactccaactttgaccacatcg 5412901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 18467549 - 18467490
Alignment:
Q  87 gattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatga 146  Q
    |||||||||||| ||||| ||||| ||  ||||||| ||||||||||||||||| |||||    
T  18467549 gattttgttgaactccgtaaattgctccatgatggtctttgactccaccatcctgaatga 18467490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 42427791 - 42427864
Alignment:
Q  76 aaatcataaaagattttgttgaattccgtcaattgttctgtgatggtttttgactccaccatcctaaatgaata 149  Q
    ||||||| || |||||||||||| || || |||||||| || | ||| ||||||||||||||| | ||||||||    
T  42427791 aaatcatcaaggattttgttgaactctgttaattgttccgtcacggtctttgactccaccatcttgaatgaata 42427864  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 29721084 - 29721036
Alignment:
Q  179 tgagtcaaagacttggtcatatacaacgactccaaccttaacgacatcg 227  Q
    |||| |||||||||||||||||||||||| |||||| || || ||||||    
T  29721084 tgagccaaagacttggtcatatacaacgattccaactttgaccacatcg 29721036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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