View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_43 (Length: 284)
Name: NF17668_high_43
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 1586854 - 1587112
Alignment:
| Q |
10 |
catcatcacaagtatgaacaccactaccatgactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatt |
109 |
Q |
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| T |
1586854 |
catcatcacaagtatgaacaccactaccatgactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatt |
1586953 |
T |
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| Q |
110 |
tctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
1586954 |
tctcaatccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccgtcaacccaattcccttcatat |
1587053 |
T |
|
| Q |
210 |
cttccactcatattatagtaataaaccccactcccacaacacttctcattcttcatttc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |
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| T |
1587054 |
cttccactcatattatagtaataaaccccactcccacaactcctgtcattcttcatttc |
1587112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 17303585 - 17303829
Alignment:
| Q |
10 |
catcatcacaagtatgaacaccactaccatgactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatt |
109 |
Q |
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|||| ||||||||||||||||| | ||||||||||||||||| ||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
17303585 |
catcttcacaagtatgaacaccgcacccatgactctgtccattagaccattctccagtataaacatccccagtataaaacctataaacaccaaacccatg |
17303684 |
T |
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| Q |
110 |
tctcaatccatctctatacataccct-tatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcata |
208 |
Q |
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| T |
17303685 |
tctcaatccttgtcgata-ttgccctctataacgacttccccttgcccatgtctccacaccatacccatcatacctcccatcaatccaatccccttcata |
17303783 |
T |
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| Q |
209 |
tcttccactcatattatagtaataaaccccactcccacaacacttc |
254 |
Q |
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| T |
17303784 |
cctcccactcatactataataataaacaccactccctgaacacttc |
17303829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 24238852 - 24239069
Alignment:
| Q |
24 |
tgaacaccactaccatgactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctc |
123 |
Q |
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||||||||| |||||||||||||||||| |||||||| |||| |||| ||| |||||||||||||||||||||||| | |||| |||||| || | | |
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| T |
24238852 |
tgaacaccaaaaccatgactctgtccattaaaccattccccagaataacaatcaccagtataaaatctataaacaccataaccatgtctcaaaccttgtt |
24238951 |
T |
|
| Q |
124 |
tatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcatatcttccactcatatt |
223 |
Q |
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|||| ||||||||| ||||||||| || ||| || |||| ||| |||| |||||||| |||||||||||||| ||||||||||||||||||| || |
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| T |
24238952 |
tataacaacccttatatctacttcccctagcccagctttcaattccataaccatcatattttccatcaacccaatcaccttcatatcttccactcacata |
24239051 |
T |
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| Q |
224 |
atagtaataaaccccact |
241 |
Q |
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||| | |||||| ||||| |
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| T |
24239052 |
ataatgataaactccact |
24239069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 32693579 - 32693777
Alignment:
| Q |
17 |
acaagtatgaacaccactaccatgactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaat |
116 |
Q |
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|||||| |||| ||| |||||||||| || ||||| |||||||||||| | || ||| |||||||| || |||||||||||| | |||| ||||| | |
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| T |
32693579 |
acaagtttgaagacccataccatgactttgaccattacaccattcaccagaaaaagaatcaccagtatagaacctataaacaccataaccatgtctcatt |
32693678 |
T |
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| Q |
117 |
ccatctctatacatacccttatacctacttcccttactccaactctcaacaccaaaaccttcatatttcccatcaacccaatccccttcatatcttcca |
215 |
Q |
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| T |
32693679 |
ccttttctatactgacccttatatctactccctctagcccaactctcaattccatatccatcatatcttccatcaacccaatcaccttcatatcttcca |
32693777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 13145373 - 13145285
Alignment:
| Q |
40 |
gactctgtccattcaaccattcaccagcataaacatctccagtataaaatctataaacaccaaacccatttctcaatccatctctatac |
128 |
Q |
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||||||||| |||||||||||||||||||| ||| | |||| |||||||||||||| |||||| || |||||| |||||||||||| |
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| T |
13145373 |
gactctgtctgttcaaccattcaccagcatagacaccctcagtgtaaaatctataaaccccaaacttatgtctcaagccatctctatac |
13145285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 41090311 - 41090403
Alignment:
| Q |
162 |
tcaacaccaaaaccttcatatttcccatcaacccaatccccttcatatcttccactcatattatagtaataaaccccactcccacaacacttc |
254 |
Q |
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|||||||||||||| ||||| || ||||||| |||||| |||||| ||||||||||||||| | | | |||||| |||||||| |||||||| |
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| T |
41090311 |
tcaacaccaaaaccatcatactttccatcaatccaatcaccttcaaatcttccactcatatgaaaatgataaacaccactccctgaacacttc |
41090403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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