View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_44 (Length: 282)
Name: NF17668_high_44
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 2550609 - 2550712
Alignment:
| Q |
15 |
ctgtgactacaactgcaattgcaggctgcaatttaaataaaacaaaaaacaagtttcttaattgttttttccttcagcaactaagcaaattcaaccaatt |
114 |
Q |
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| T |
2550609 |
ctgtgactacaactgcaattgcaggctgcaatttaaataaaacaaaaaacaagtttcttaattgttttttccttcagcaactaaacaaattcaaccaatt |
2550708 |
T |
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| Q |
115 |
tcac |
118 |
Q |
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|||| |
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| T |
2550709 |
tcac |
2550712 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 2550795 - 2550875
Alignment:
| Q |
202 |
attcataccagcagcaatgaagcgttgacattgttgaatcaaattagtgaatctggaatcatcaggtgtaaaagaagcccc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2550795 |
attcataccagcagcaatgaagcgttgacattgttgaatcaaattagtgaatctggaatcatcaggtgcaaaagaagcccc |
2550875 |
T |
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