View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_high_5 (Length: 694)
Name: NF17668_high_5
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 166 - 678
Target Start/End: Original strand, 25352245 - 25352761
Alignment:
| Q |
166 |
ctacaatatccaagagatgtgttacagaaagtacattat----taagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtaca |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25352245 |
ctacaatatccaagagatgtgttacagaaagtacattatatattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtaca |
25352344 |
T |
|
| Q |
262 |
ggcgggttagggtaagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttctt |
361 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25352345 |
ggcgggttagggtcagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttctt |
25352444 |
T |
|
| Q |
362 |
gattatggttgagaggctttccatcaacaagcacttctggttgtcgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgtttt |
461 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25352445 |
gattatggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgtttt |
25352544 |
T |
|
| Q |
462 |
tctctttgctgcttcatatggtttaacattgcttagagtgtttacctgatataacaaacacattaccaagttagataaaactaacacnnnnnnnnnnnng |
561 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25352545 |
tctctttgctgcttcatttggtttaacattgcttagagtgtttacctgatataacaaacacattagcaagttagataaaactaacacaaaaacaaaaaac |
25352644 |
T |
|
| Q |
562 |
agcaattaatttagcagaataaaactataaaattaccctctttttaggttcttgtttgatattgtgtttaaccaagactttcgcaacccacttagacctg |
661 |
Q |
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| T |
25352645 |
aacaattaatttagcagaataaaactataaaattaccctctttttaggttcttgtttgatattgtgtttaaccaagactttcgcaacccacttagacctg |
25352744 |
T |
|
| Q |
662 |
gaactcttgaaatttaa |
678 |
Q |
| |
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||||||||||||||||| |
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| T |
25352745 |
gaactcttgaaatttaa |
25352761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 166 - 678
Target Start/End: Original strand, 25356914 - 25357435
Alignment:
| Q |
166 |
ctacaatatccaagagatgtgttacagaaagtacattattaagtaactaa---gaattgaaataaaatgaagatatgaagactcacataagatggtacag |
262 |
Q |
| |
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|||||| |||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25356914 |
ctacaacatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaag |
25357013 |
T |
|
| Q |
263 |
gcgggttagggtaagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttcttg |
362 |
Q |
| |
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| |||||||| ||||| |||||||| ||| || ||||||| ||||||||||| |||||||| ||| |||||| |||| ||||| |||| || |
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| T |
25357014 |
g---gttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttc |
25357110 |
T |
|
| Q |
363 |
attatggttgagaggctttccatcaacaagcacttctggttgtcgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgttttt |
462 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||| ||||||||||||| |
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| T |
25357111 |
attctggttgagaggctctccatcaacaagcacttctggttgttgttgatctaattctttggtaatcttataacatgcatcgcg---tctttttgttttt |
25357207 |
T |
|
| Q |
463 |
ctctttgctgcttcatatggtttaacattgcttagagtgttta------------cctgatataacaaacacattaccaagttagataaaactaacacnn |
550 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
25357208 |
ctctttgctgcttcgtttggtttaacattgcttagagtgtttaccttaggcctcccctgatataacaagcacattagcaagttagataaaacaaacacaa |
25357307 |
T |
|
| Q |
551 |
nnnnnnnnnngagcaattaatttagcagaataaaactataaaattaccctctttttaggttcttgtttgatattgtgtttaaccaagactttcgcaaccc |
650 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||| |
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| T |
25357308 |
aaacaaagaagaacaattaatttagcagaataaaacaataaaattaccctcttgttaggttcttgattgatattgtgtttaaccaagacttccttaaccc |
25357407 |
T |
|
| Q |
651 |
acttagacctggaactcttgaaatttaa |
678 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
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| T |
25357408 |
acttagacctggaactattgaaatttaa |
25357435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 25352085 - 25352211
Alignment:
| Q |
6 |
catcatcataatcatcatcgttaatcacaattgggcaggttgcatctcttccaggaccattatatacnnnnnnnaaggccaaggttctcaatctattact |
105 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25352085 |
catcatcataatcatcatcgttaatcacaattgggcaggttgcatctcttccaggaccattatatacttttttgaaggccaaggttctcaatctattact |
25352184 |
T |
|
| Q |
106 |
agtcctccttaccttctttaaatccaa |
132 |
Q |
| |
|
||||||||||||||||| ||||||||| |
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| T |
25352185 |
agtcctccttaccttctataaatccaa |
25352211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 25349547 - 25349672
Alignment:
| Q |
6 |
catcatcataatcatcatcgttaatcacaattgggcaggttgcatctcttccaggaccattatatacnnnnnnnaaggccaaggttctcaatctattact |
105 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| |
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| T |
25349547 |
catcatcataatcatcatcgttaatcacaattggactagttgcatctctcccag-accatcatatacttttttgaaggccaaggttctcaatctattact |
25349645 |
T |
|
| Q |
106 |
agtcctccttaccttctttaaatccaa |
132 |
Q |
| |
|
||||||||| ||| ||||||||||||| |
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| T |
25349646 |
agtcctcctcaccatctttaaatccaa |
25349672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 25349711 - 25349805
Alignment:
| Q |
168 |
acaatatccaagagatgtgttacagaaagtacattattaagtaactaa---gaattgaaataaaatgaagatatgaagactcacataagatggta |
259 |
Q |
| |
|
||||||||||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25349711 |
acaatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggta |
25349805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 25356754 - 25356880
Alignment:
| Q |
6 |
catcatcataatcatcatcgttaatcacaattgggcaggttgcatctcttccaggaccattatatacnnnnnnnaaggccaaggttctcaatctattact |
105 |
Q |
| |
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|||||||||| |||||||||||||||| |||||| | || ||||||| | |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
25356754 |
catcatcatattcatcatcgttaatcaaaattggactggctgcatctttcccaggaccatcatatacttttttgaaggccaaggttctcaatctattact |
25356853 |
T |
|
| Q |
106 |
agtcctccttaccttctttaaatccaa |
132 |
Q |
| |
|
||||||||| ||| |||||||||||| |
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|
| T |
25356854 |
agtcctcctcaccacctttaaatccaa |
25356880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 25361580 - 25361677
Alignment:
| Q |
166 |
ctacaatatccaagagatgtgttacagaaagtacattattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtacagg |
263 |
Q |
| |
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||||||||||||| ||| ||||||| ||||| |||||| |||||||| |||||||||||||||||||| | || ||||||| |||||||||||| |
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| T |
25361580 |
ctacaatatccaatagagatgttacataaagtctattattgagtaactacgaattgaaataaaatgaagacaaacaggctcacatcagatggtacagg |
25361677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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