View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_low_1 (Length: 972)

Name: NF17668_low_1
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_low_1
NF17668_low_1
[»] chr8 (9 HSPs)
chr8 (13-972)||(43907233-43908183)
chr8 (210-321)||(4558681-4558792)
chr8 (214-306)||(34563137-34563229)
chr8 (251-327)||(40280275-40280351)
chr8 (209-303)||(44865659-44865753)
chr8 (209-320)||(29699136-29699247)
chr8 (292-327)||(33553227-33553262)
chr8 (290-321)||(42237498-42237529)
chr8 (291-321)||(35374449-35374479)
[»] chr2 (11 HSPs)
chr2 (214-312)||(31461325-31461423)
chr2 (210-316)||(33197320-33197426)
chr2 (248-321)||(32633693-32633765)
chr2 (210-321)||(11393441-11393553)
chr2 (210-321)||(11410102-11410214)
chr2 (242-321)||(28803582-28803661)
chr2 (278-317)||(42457899-42457938)
chr2 (289-327)||(3227731-3227769)
chr2 (251-321)||(10150679-10150749)
chr2 (250-321)||(31228893-31228966)
chr2 (248-321)||(3673728-3673801)
[»] chr5 (6 HSPs)
chr5 (210-321)||(9202824-9202935)
chr5 (290-321)||(12595816-12595847)
chr5 (290-320)||(10363713-10363743)
chr5 (288-318)||(12425532-12425562)
chr5 (210-304)||(26516181-26516275)
chr5 (290-327)||(12242758-12242795)
[»] chr1 (9 HSPs)
chr1 (209-321)||(17269133-17269244)
chr1 (242-322)||(45234112-45234192)
chr1 (290-327)||(14737775-14737812)
chr1 (290-327)||(48748653-48748690)
chr1 (269-321)||(11211060-11211112)
chr1 (210-254)||(21516256-21516300)
chr1 (279-317)||(15477530-15477568)
chr1 (214-264)||(24153164-24153214)
chr1 (290-327)||(50319255-50319292)
[»] scaffold0024 (1 HSPs)
scaffold0024 (210-321)||(27459-27570)
[»] chr7 (5 HSPs)
chr7 (211-302)||(6552365-6552456)
chr7 (257-316)||(21853197-21853256)
chr7 (210-263)||(5630049-5630102)
chr7 (250-327)||(7244625-7244702)
chr7 (290-327)||(34035902-34035939)
[»] chr6 (6 HSPs)
chr6 (274-321)||(10728579-10728626)
chr6 (235-321)||(10749304-10749389)
chr6 (210-306)||(5328857-5328953)
chr6 (211-322)||(6078364-6078475)
chr6 (290-327)||(2205638-2205675)
chr6 (290-327)||(5731555-5731592)
[»] chr3 (7 HSPs)
chr3 (210-306)||(54775011-54775107)
chr3 (274-317)||(849609-849652)
chr3 (290-321)||(10101552-10101583)
chr3 (290-321)||(10212477-10212508)
chr3 (290-321)||(15304423-15304454)
chr3 (251-321)||(3182438-3182508)
chr3 (210-264)||(20874433-20874487)
[»] chr4 (3 HSPs)
chr4 (330-385)||(25487466-25487521)
chr4 (210-263)||(4684243-4684296)
chr4 (274-319)||(49803158-49803203)
[»] scaffold0590 (1 HSPs)
scaffold0590 (212-306)||(1165-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (212-306)||(2716-2810)


Alignment Details
Target: chr8 (Bit Score: 904; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 904; E-Value: 0
Query Start/End: Original strand, 13 - 972
Target Start/End: Complemental strand, 43908183 - 43907233
Alignment:
Q  13 aatatcaattaccataatgagtgaaattaaaaatcttcaattagtatttttggatcaatcaatttagtcttgaagtcctaaagtacaaatgtgattgagg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908183 aatatcaattaccataatgagtgaaattaaaaatcttcaattagtatttttggatcaatcaatttagtcttgaagtcctaaagtacaaatgtgattgagg 43908084  T
Q  113 atcattttagaatttcgttaatttcaagactaaactctctaatcattacaatttcatgactaaatcagtgtttcactatagtaccatatagagatcattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908083 atcattttagaatttcgttaatttcaagactaaactctctaatcattacaatttcatgactaaatcagtgtttcactatagtaccatatagagatcattt 43907984  T
Q  213 ggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaatt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43907983 ggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtcaaatt 43907884  T
Q  313 gttttcataagctatgtcaagtgtttatgtcaatagataaactcaaatgagttaatcaaaataggcctatagtatagattataaaatgagatatggtgtg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43907883 gttttcataagctatgtcaagtgtttatgtcaatagataaactcaaatgagttaatcaaaataggcctatagtatagattataaaatgagatacggtgtg 43907784  T
Q  413 aaataccgttatggtgtctgttacttttatataggttcaggttgatcatggaagaggtggggctgctttcaaattcaacataatttggaacagaatcaac 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907783 aaataccgttatggtgtctgttacttttatataggttcaggttgatcatggaagaggtggggctgctttcaaattcaacataatttggaacagaatcaac 43907684  T
Q  513 aacatttcttgattgaaagttttcttgaaacgctcccatctctttattttcgaagtcagaaacttgcggcgattgatgcatagacaatgtttcggaacaa 612  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907683 aacatttcttgattgaaagttttcttgaaacgctcccacctctttattttcgaagtcagaaacttgcggcgattgatgcatagacaatgtttcggaacaa 43907584  T
Q  613 tcattttcttctgatccttccacaaagctctctcgtgggctaatgaattcttcagaatgagatgaatgagtcttttgatgctcttccttatcagaagaat 712  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||| |||||||||||||||||||||    
T  43907583 tcattttcttctgatccttccacaaagctctctcgtgggctaatgaattcttcagaa---------tgagtcctttgacgctcttccttatcagaagaat 43907493  T
Q  713 ggacacaagaatactcttctggggcttctttgtcttcttcatcttcttcatcatcagaatacacatattcatactgttgatctctgcaatagatacaaat 812  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907492 ggacacaagaatactcttctggggcttcttcgtcttcttcatcttcttcatcatcagaatacacatattcatactgttgatctctgcaatagatacaaat 43907393  T
Q  813 agaatgttgtaatttaaatacatgttatgggaaaaatgaatgtgctagttgaatgggaggtgtagatagaaaaagaagagcattagcaagacctttggat 912  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907392 agaatgttgtaatttaaatacatgttatgggaaaaatgaatgtgctagttgaatgggaggtgtagatagaaaaagaagagcattagcaagacctttggat 43907293  T
Q  913 taaggggaatctaccagtgaaggttaagaatgtgacaagaaaaatggcaatggaaaatag 972  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907292 taaggggaatctaccagtgaaggttaagaatgtgacaagaaaaatggcaatggaaaatag 43907233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 4558681 - 4558792
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 309  Q
    |||||||||||| ||||||||  | |||||| |||||| |||||| || |||||| |||  || ||| ||||||||   |||||||||||||||||||||    
T  4558681 tttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaa 4558780  T
Q  310 attgttttcata 321  Q
    ||| ||||||||    
T  4558781 attattttcata 4558792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 306
Target Start/End: Original strand, 34563137 - 34563229
Alignment:
Q  214 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 306  Q
    |||||||| ||||||||||| |||||| ||||||  ||||||||||||||| ||| ||| ||||||||||||    ||| |||||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagt 34563229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 40280351 - 40280275
Alignment:
Q  251 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||||||||||  || ||| ||||||||||||    ||||||||||||||||| ||||||||||||||||||||    
T  40280351 ttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagtaaaattgttttcataagctat 40280275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 44865753 - 44865659
Alignment:
Q  209 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataa 303  Q
    ||||||||||||| ||||||||||  |||||| ||| || ||||||| |||||||| |||| || ||| |||||||| || ||||||| ||||||    
T  44865753 atttggataaacaacttaattaaatgcttatagcattaaagtttatcttataagtgcttacttataagctatttctatcgcaaaagattaaataa 44865659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 29699136 - 29699247
Alignment:
Q  209 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 308  Q
    ||||||||||||  |||| ||||   |||||| ||||||| |||||||||||| || |||  |||||||||||||||    ||||||||||||||||| |    
T  29699136 atttggataaacgacttagttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtca 29699235  T
Q  309 aattgttttcat 320  Q
    || |||| ||||    
T  29699236 aaatgttgtcat 29699247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 33553227 - 33553262
Alignment:
Q  292 aagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33553227 aagataaaataaagtcaaattgttttcataagctat 33553262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 42237529 - 42237498
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcata 321  Q
    ||||||||||||||||||||||||||||||||    
T  42237529 aaaagataaaataaagttaaattgttttcata 42237498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 35374479 - 35374449
Alignment:
Q  291 aaagataaaataaagttaaattgttttcata 321  Q
    |||||||||||||||||||||||||||||||    
T  35374479 aaagataaaataaagttaaattgttttcata 35374449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 214 - 312
Target Start/End: Original strand, 31461325 - 31461423
Alignment:
Q  214 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaatt 312  Q
    |||||||| ||||||||| | ||| || |||||| || ||||||||||||||||| ||| ||| ||||||||    ||||||||||||||||| |||||    
T  31461325 gataaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagtcaaatt 31461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 33197426 - 33197320
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 309  Q
    |||||||||||| || |||||||| |||||| |||||| | |||||||||||||| |||  || ||| ||||||||    |||||||| |||||||| ||    
T  33197426 tttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtcaa 33197327  T
Q  310 attgttt 316  Q
     ||||||    
T  33197326 gttgttt 33197320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 32633765 - 32633693
Alignment:
Q  248 tgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    |||||||||||||| ||||||||||  |||||||||||  | |||||||||| |||| | ||||||||||||||    
T  32633765 tgtttatcatataattggttacatatgagttatttctatag-aaaagataaactaaaatcaaattgttttcata 32633693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 11393553 - 11393441
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 309  Q
    |||||||||||| ||||||||| | |||||| || || ||||||||||||||||| |||  || ||| ||||||||    |||||||| |||||| | ||    
T  11393553 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaa 11393454  T
Q  310 att-gttttcata 321  Q
    ||| |||||||||    
T  11393453 attcgttttcata 11393441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 11410214 - 11410102
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 309  Q
    |||||||||||| ||||||||| | |||||| || || ||||||||||||||||| |||  || ||| ||||||||    |||||||| |||||| | ||    
T  11410214 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaa 11410115  T
Q  310 att-gttttcata 321  Q
    ||| |||||||||    
T  11410114 attcgttttcata 11410102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 28803661 - 28803582
Alignment:
Q  242 cataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    |||||||| |||||||||||||| ||| ||| |||||||||| |    ||||||||||||||||| ||| || |||||||    
T  28803661 cataaatgcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcata 28803582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 42457899 - 42457938
Alignment:
Q  278 tatttctagcgtaaaagataaaataaagttaaattgtttt 317  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  42457899 tatttctatagtaaaagataaaataaagttaaattgtttt 42457938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 3227769 - 3227731
Alignment:
Q  289 taaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  3227769 taaaaaataaaacaaagttaaattgttttcataagctat 3227731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 10150679 - 10150749
Alignment:
Q  251 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    |||| ||||||||| |||  || ||||||||||||   ||||||||||||||| ||||||| |||||||||    
T  10150679 ttattatataagtgtttatgtataagttatttctataataaaagataaaataacgttaaatggttttcata 10150749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 31228966 - 31228893
Alignment:
Q  250 tttatcatataagtggttacatacaagttatttcta--gcgtaaaagataaaataaagttaaattgttttcata 321  Q
    |||||||||||||||||||   ||| ||||||||||  ||  ||||||||||||||||  ||||||||||||||    
T  31228966 tttatcatataagtggttatgcacatgttatttctatagctcaaaagataaaataaaggcaaattgttttcata 31228893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 3673728 - 3673801
Alignment:
Q  248 tgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    ||||| ||||||||||| |||  ||  |||||||||||    |||| |||||||||||||||||||||||||||    
T  3673728 tgtttgtcatataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcata 3673801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 321
Target Start/End: Complemental strand, 9202935 - 9202824
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcat-ataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 308  Q
    ||||||||||||||||| ||  |  |||||| || || |||||||||| ||||||| ||| ||| ||| |||||||   | |||||||||||||||||||    
T  9202935 tttggataaacatcttatttgca-gcttatagcacaagtgtttatcatgataagtgcttatatataagctatttctgtagcaaaagataaaataaagtta 9202837  T
Q  309 aattgttttcata 321  Q
    |||||||||||||    
T  9202836 aattgttttcata 9202824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 12595847 - 12595816
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcata 321  Q
    ||||||||||||||||||||||||||||||||    
T  12595847 aaaagataaaataaagttaaattgttttcata 12595816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 290 - 320
Target Start/End: Original strand, 10363713 - 10363743
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcat 320  Q
    |||||||||||||||||||||||||||||||    
T  10363713 aaaagataaaataaagttaaattgttttcat 10363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 12425532 - 12425562
Alignment:
Q  288 gtaaaagataaaataaagttaaattgttttc 318  Q
    |||||||||||||||||||||||||||||||    
T  12425532 gtaaaagataaaataaagttaaattgttttc 12425562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 26516181 - 26516275
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaa 304  Q
    |||||||||||| ||||||||| | |||||| |||||  | |||||||||||||| |||  || ||| ||||||||    |||||||||||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 12242795 - 12242758
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  12242795 aaaagataaaatagagtcaaattgttttcataagctat 12242758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 17269133 - 17269244
Alignment:
Q  209 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 308  Q
    |||||||||| || ||| ||||||  || |||||||||| |||| ||||||||||| |||  || |||||||||||||   |||||  |||||||||| |    
T  17269133 atttggataagcaacttgattaaatactgatatcataaacgttt-tcatataagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtca 17269231  T
Q  309 aattgttttcata 321  Q
    |||||||||||||    
T  17269232 aattgttttcata 17269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 45234112 - 45234192
Alignment:
Q  242 cataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataa 322  Q
    |||||||||||||||||| |||| ||   |||| ||||||||||   |||||||||||||||||| ||||| |||||||||    
T  45234112 cataaatgtttatcatatgagtgcttttgtacatgttatttctataataaaagataaaataaagtcaaattattttcataa 45234192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 14737812 - 14737775
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14737812 aaaagataaaataaagtcaaattgttttcataagctat 14737775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 48748690 - 48748653
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  48748690 aaaagatgaaataaagttaaattgttttcataagctat 48748653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 11211060 - 11211112
Alignment:
Q  269 catacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    |||| |||||||||||||   ||||||||||||||||||||||| ||||||||    
T  11211060 catataagttatttctagaacaaaagataaaataaagttaaatttttttcata 11211112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 21516256 - 21516300
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttat 254  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  21516256 tttggataaacaacttaattaaacgcttataacataaatgtttat 21516300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 15477530 - 15477568
Alignment:
Q  279 atttctagcgtaaaagataaaataaagttaaattgtttt 317  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  15477530 atttctatagtaaaagataaaataaagttaaattgtttt 15477568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 24153164 - 24153214
Alignment:
Q  214 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtg 264  Q
    |||||||| ||||||||||| |||||| |||| ||||||||||||| ||||    
T  24153164 gataaacaacttaattaaacacttataacatatatgtttatcatatgagtg 24153214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 50319255 - 50319292
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50319255 aaaagataaaataaagtcaagttgttttcataagctat 50319292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 27459 - 27570
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 309  Q
    |||||||||||| ||||| ||||| |||||| |||||    ||||||| |||||| |||  || ||||||||||||    | ||||||||||||||| ||    
T  27459 tttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaa 27558  T
Q  310 attgttttcata 321  Q
    ||||||||||||    
T  27559 attgttttcata 27570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 6552456 - 6552365
Alignment:
Q  211 ttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaata 302  Q
    |||||||| || ||||||||||| |||| ||||||| |  |||||||||||||| |||  |||||||||||||||    |||||||||||||    
T  6552456 ttggataagcaacttaattaaacacttaaatcataagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaata 6552365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 21853256 - 21853197
Alignment:
Q  257 tataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttt 316  Q
    |||||||| ||| ||| ||||||||||||    |||||||||||||||||||||||||||    
T  21853256 tataagtgattatatataagttatttctattacaaaagataaaataaagttaaattgttt 21853197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 5630102 - 5630049
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagt 263  Q
    |||||||||||| |||||||||  |||||||  |||| ||||||||||||||||    
T  5630102 tttggataaacaacttaattaagtccttatagaataagtgtttatcatataagt 5630049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 7244625 - 7244702
Alignment:
Q  250 tttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||||||||||| |||  || ||| ||||||||    ||||||||||| ||||| ||| ||||||||||||||||    
T  7244625 tttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcataagctat 7244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 34035902 - 34035939
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcataagctat 327  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  34035902 aaaaaataatataaagttaaattgttttcataagctat 34035939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 10728579 - 10728626
Alignment:
Q  274 aagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||    
T  10728579 aagttatttctaaagcaaaagataaaataaagttaaattgttttcata 10728626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 10749389 - 10749304
Alignment:
Q  235 cttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    ||||||||||||  ||||||||||||||  ||||  || |||| |||||||   |||||||||||||||||||||||| ||||||||    
T  10749389 cttatatcataagcgtttatcatataagatgttatgtataagt-atttctataataaaagataaaataaagttaaattattttcata 10749304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 5328857 - 5328953
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 306  Q
    |||| ||||||| ||||||||| | | |||| |||||||| |||||||| ||||| |||| |  ||||||||||||    |||||||||||||||||    
T  5328857 tttgaataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagt 5328953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 322
Target Start/End: Complemental strand, 6078475 - 6078364
Alignment:
Q  211 ttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaa 310  Q
    ||||||||||| ||||||||| |  ||||| |||||  | |||||||| | |||||||| ||  || |||||||| |  | ||| ||||||||||| |||    
T  6078475 ttggataaacaacttaattaagcggttataacataagcgcttatcatacatgtggttacgtatgagctatttctatcacagaaggtaaaataaagtcaaa 6078376  T
Q  311 ttgttttcataa 322  Q
    ||||||||||||    
T  6078375 ttgttttcataa 6078364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 2205675 - 2205638
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcataagctat 327  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  2205675 aaaagataaaacaaagtcaaattgttttcataagctat 2205638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 5731555 - 5731592
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcataagctat 327  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  5731555 aaaagataaaatgaagtcaaattgttttcataagctat 5731592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 54775011 - 54775107
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 306  Q
    |||| ||||||| ||||||||| | | |||| |||||||| |||||||| ||||| |||| |  ||||||||||||    |||||||||||||||||    
T  54775011 tttgaataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagt 54775107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 849609 - 849652
Alignment:
Q  274 aagttatttctagcgtaaaagataaaataaagttaaattgtttt 317  Q
    |||| ||||||| || ||||||||||||||||||||||||||||    
T  849609 aagtcatttctatcggaaaagataaaataaagttaaattgtttt 849652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 10101583 - 10101552
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcata 321  Q
    ||||||||||||||||||||||||||||||||    
T  10101583 aaaagataaaataaagttaaattgttttcata 10101552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 10212508 - 10212477
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcata 321  Q
    ||||||||||||||||||||||||||||||||    
T  10212508 aaaagataaaataaagttaaattgttttcata 10212477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 15304454 - 15304423
Alignment:
Q  290 aaaagataaaataaagttaaattgttttcata 321  Q
    ||||||||||||||||||||||||||||||||    
T  15304454 aaaagataaaataaagttaaattgttttcata 15304423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 3182508 - 3182438
Alignment:
Q  251 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 321  Q
    ||||||| |||||| |||  || |||||| |||||  | ||||||||||||||||| ||||||||||||||    
T  3182508 ttatcatttaagtgtttatgtataagttacttctatagaaaaagataaaataaagtcaaattgttttcata 3182438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 20874487 - 20874433
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtg 264  Q
    |||||||||||| ||||||||| | |||||| ||||||||  |||||||||||||    
T  20874487 tttggataaacaacttaattaagcacttatagcataaatgcatatcatataagtg 20874433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 385
Target Start/End: Complemental strand, 25487521 - 25487466
Alignment:
Q  330 caagtgtttatgtcaatagataaactcaaatgagttaatcaaaataggcctatagt 385  Q
    |||||| |||||  ||||||||||||||||| |||||||||||||| | |||||||    
T  25487521 caagtgcttatgctaatagataaactcaaataagttaatcaaaatatggctatagt 25487466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 4684296 - 4684243
Alignment:
Q  210 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagt 263  Q
    |||||||||| | ||||||||| | ||| |||||||| ||||||||||||||||    
T  4684296 tttggataaatagcttaattaagcacttctatcataagtgtttatcatataagt 4684243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 49803158 - 49803203
Alignment:
Q  274 aagttatttctagcgtaaaagataaaataaagttaaattgttttca 319  Q
    ||||||||||||  | |||||||||||| |||||||||||||||||    
T  49803158 aagttatttctatagcaaaagataaaatgaagttaaattgttttca 49803203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 1259 - 1165
Alignment:
Q  212 tggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 306  Q
    |||||||||| |||||||||   |||||| |||||| || ||||||||||||| |||  || ||| ||||||||    |||||||||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 2716 - 2810
Alignment:
Q  212 tggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 306  Q
    |||||||||| |||||||||   |||||| |||||| || ||||||||||||| |||  || ||| ||||||||    |||||||||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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