View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_low_11 (Length: 523)

Name: NF17668_low_11
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_low_11
NF17668_low_11
[»] chr1 (6 HSPs)
chr1 (1-376)||(15884919-15885294)
chr1 (15-376)||(12637754-12638115)
chr1 (1-370)||(12610760-12611129)
chr1 (402-505)||(15885317-15885420)
chr1 (414-505)||(12637634-12637725)
chr1 (406-505)||(12610628-12610727)
[»] scaffold0059 (1 HSPs)
scaffold0059 (29-369)||(62894-63234)
[»] scaffold0554 (1 HSPs)
scaffold0554 (216-360)||(5626-5770)
[»] chr3 (5 HSPs)
chr3 (217-378)||(23146647-23146811)
chr3 (244-378)||(23039772-23039909)
chr3 (244-378)||(23036895-23037032)
chr3 (216-300)||(23033659-23033743)
chr3 (277-373)||(23141003-23141099)
[»] chr6 (1 HSPs)
chr6 (244-362)||(21780681-21780799)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 15884919 - 15885294
Alignment:
Q  1 tggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatc 100  Q
    ||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |||||    
T  15884919 tggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatc 15885018  T
Q  101 catcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttg 200  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||  |||    
T  15885019 catcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcgcgtctttg 15885118  T
Q  201 gggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga 300  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  15885119 gggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaaacttgaga 15885218  T
Q  301 ggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 376  Q
    ||||||||||||| |||||||  ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||    
T  15885219 ggttgcatagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaaaga 15885294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 376
Target Start/End: Complemental strand, 12638115 - 12637754
Alignment:
Q  15 caaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatccatcaacctcactg 114  Q
    ||||||||||| |||||||||  ||| ||||||||||||| | | ||||||||||||||||| |||| |||  | ||||| ||| |||||||| |||||     
T  12638115 caaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgattcacaacaaggatcacccatcaacatcactc 12638016  T
Q  115 aacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatc 214  Q
    ||   |||||| ||||||   |  ||||   | | | |||||||||||||||||||||||||| ||||||| || |||  | |||||  || ||||||||    
T  12638015 aagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaagaacagctcgtatcgttggcaaatggagaatc 12637916  T
Q  215 aattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacga 314  Q
    | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||   |||||||||| |    
T  12637915 agttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttcaggtctaaaattgaggtattgcatagacaa 12637816  T
Q  315 attgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 376  Q
    ||||||| |||| | | ||| ||||||| ||||||||||||||| ||||||||||| |||||    
T  12637815 attgatcttatattagtaaacatcatcaatgaacataaagaagctaagtcaaaagcaaaaga 12637754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 12611129 - 12610760
Alignment:
Q  1 tggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatc 100  Q
    ||||||||||  ||||||| ||||| ||||| ||  | |||||||||||||||| ||||| ||||||| | ||||  |||| |||  | ||||| ||  |    
T  12611129 tggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgattcgcaacaagggtcgcc 12611030  T
Q  101 catcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttg 200  Q
    | ||||  | ||| | ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| |  ||||||||| |  |   |     
T  12611029 cgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagagaagagtttggatctatt 12610930  T
Q  201 gggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga 300  Q
    ||  | ||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||    
T  12610929 ggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaaactggaga 12610830  T
Q  301 ggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagc 370  Q
    |||||||||| | ||||||||| ||||| ||||| ||  ||| |||||||||||||||||||||||||||    
T  12610829 ggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagc 12610760  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 15885317 - 15885420
Alignment:
Q  402 gatttggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagta 501  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  15885317 gatttggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaagga 15885416  T
Q  502 taat 505  Q
    ||||    
T  15885417 taat 15885420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 414 - 505
Target Start/End: Complemental strand, 12637725 - 12637634
Alignment:
Q  414 gttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataat 505  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  12637725 gttcttcaaaaatttcaaggtggtaatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataat 12637634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 406 - 505
Target Start/End: Complemental strand, 12610727 - 12610628
Alignment:
Q  406 tggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataat 505  Q
    |||| |||||||||||||||||||||||||| ||||| |   || |||||||||| |||||||| ||||| |||||| || ||||||||||||| |||||    
T  12610727 tggtagacgttcttctaaaattccaaggtggtaatgacagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataat 12610628  T

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Target: scaffold0059 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 29 - 369
Target Start/End: Complemental strand, 63234 - 62894
Alignment:
Q  29 ttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggttccaagcaaggttcatccatcaacctcactgaacttgtagtttca 128  Q
    |||||||  ||||||||||||||||| |||  |||||||||||||||| |||| ||   | ||||| |   |  ||||| |||||||||||||| || ||    
T  63234 ttcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcactgaacttgtacttaca 63135  T
Q  129 tcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaagaagagttcgcgtggttggggaagggagaatcaattgcaggaggtt 228  Q
     ||| | || ||||| |||| | ||||||||||||  |||||||||||| ||||||| |||| ||||  ||||| ||   || |||||||| ||||||||    
T  63134 acaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaagaacagtttgcgtcattgggaaatataggatcaattggaggaggtt 63035  T
Q  229 ttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatact 328  Q
    |||| ||   |||| | ||||||||||| ||||||||||||||| | | |  |   |||||||||||| ||||||||||||||| | ||||||| |||||    
T  63034 ttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaaaggcctaaacttaagaggttgcatagacaacttgatcagatact 62935  T
Q  329 ggaaaatatcatcattgaacataaagaagcaaagtcaaaag 369  Q
     ||||| ||| ||||| |||||||||||||||||| |||||    
T  62934 tgaaaacatcgtcattcaacataaagaagcaaagttaaaag 62894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 360
Target Start/End: Original strand, 5626 - 5770
Alignment:
Q  216 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaa 315  Q
    |||||||||||||||||| | || ||  ||||||| || ||||||||||| ||||  ||| |||||||||||||||| ||||||| | | ||| ||| ||    
T  5626 attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa 5725  T
Q  316 ttgatcatatactggaaaatatcatcattgaacataaagaagcaa 360  Q
     |||||| ||||| ||||| ||||||| ||| |||||||||||||    
T  5726 ctgatcaaatacttgaaaacatcatcaatgagcataaagaagcaa 5770  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 217 - 378
Target Start/End: Complemental strand, 23146811 - 23146647
Alignment:
Q  217 ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat 316  Q
    ||||||| ||||||||| | || ||  ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| ||     
T  23146811 ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac 23146712  T
Q  317 tgatcatatactggaaaatatcatcattgaacataaagaagcaaagt---caaaagccaaagatg 378  Q
    |||||| ||| | ||||| ||||||| ||| |||||||| | |||||   |||||||||||||||    
T  23146711 tgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatg 23146647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 23039909 - 23039772
Alignment:
Q  244 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 343  Q
    ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| ||| | ||||| |||||||     
T  23039909 tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaa 23039810  T
Q  344 tgaacataaagaagcaaagt---caaaagccaaagatg 378  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23039809 tgagcataaagaggaaaagtacacaaaagccaaagatg 23039772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 23037032 - 23036895
Alignment:
Q  244 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 343  Q
    ||||||| |||||||||||||| || | | || |||||||||||||||| || |||||| | ||| ||| || |||||| ||| | ||||| |||||||     
T  23037032 tgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaa 23036933  T
Q  344 tgaacataaagaagcaaagt---caaaagccaaagatg 378  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23036932 tgagcataaagaggaaaagtacacaaaagccaaagatg 23036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
Q  216 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga 300  Q
    ||||||||||||||| || | || ||  ||||||||||  ||||||||||||||| |||| ||||| | |||||||| |||||||    
T  23033743 attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga 23033659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 373
Target Start/End: Complemental strand, 23141099 - 23141003
Alignment:
Q  277 ctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaa 373  Q
    ||||||| |||||||  ||||||||| ||||| |||   ||||||| ||| ||||||| ||||||| ||| || || || || ||||||||||||||    
T  23141099 ctggtttaaggcctacccttgagagggtgcatcgacaggttgatcagataatggaaaacatcatcagtgagcacaaggaggccaagtcaaaagccaa 23141003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 21780799 - 21780681
Alignment:
Q  244 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 343  Q
    ||||||||||  |||||||| || ||| |||| |||| ||||||||||| |||||||| || ||  ||| || |||||| ||| | ||||| |||||||     
T  21780799 tgtttccttctactaaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaacatcatcaa 21780700  T
Q  344 tgaacataaagaagcaaag 362  Q
     || |||||||| ||||||    
T  21780699 ggaccataaagaggcaaag 21780681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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