View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_12 (Length: 514)
Name: NF17668_low_12
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 7494597 - 7494095
Alignment:
| Q |
1 |
cctttcgataaagctccttaaaaattgtcgggttttaactgtcttacagtgtagcaaaccatgttttggttttttggctactgttgttttgtttccattc |
100 |
Q |
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| T |
7494597 |
cctttcgataaagctccttaaaaattgtcgggttttaactgtcttacggtgtagcaagaattgttttggttttctggctaccg-----ttgtttccattc |
7494503 |
T |
|
| Q |
101 |
--tttggcttgatagcttttaaggtggccacaaatgtaattcaaattgaagaag-aaaaaacatgatgacttattttcttatggaaacttcttttcttct |
197 |
Q |
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| T |
7494502 |
tttttggcttgatagcttttaaggtgaccacaaatgtaattcaaattgaagaagaaaaaaacatgatgacttattttcttatggaaacttcttttcttct |
7494403 |
T |
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| Q |
198 |
cattgtttccattctattcgcagggacaggatcgtattctgcttattttgtctctgctattgatttcttgttagcttatcaagttattttttcttgaata |
297 |
Q |
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| T |
7494402 |
cattgtttccattctattcgcagggactggatcgtattctgcatattttgtctctgctattgatttcttgttagcttatcaagttattttttcttgaata |
7494303 |
T |
|
| Q |
298 |
attgatgtggtggcatcagttgcagagttgacagagtagcgggaaagtgagtttgcagtaagccatgttttctcatttattgaggagtggtaaggcaaat |
397 |
Q |
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| T |
7494302 |
attgatgtggtggcatcagttgcagagttgacagagtagcgggaaagtgagtttgtagtaagccatgttttctcatttattgtggagtggtaaggtaaat |
7494203 |
T |
|
| Q |
398 |
tgttgcagttcaatcttcttttgctcttaggcgttggaagtatcatttggtcaataaggcttataggagctttggtggcatctatgttttttatgtcctt |
497 |
Q |
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| T |
7494202 |
tgttgcagttcaatcttcttttgctcttaggcgttggaagtatcatttggtcaataaggcttataagagctttggtggcatctatgttttttatgtcctt |
7494103 |
T |
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| Q |
498 |
attttctt |
505 |
Q |
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| T |
7494102 |
tttttctt |
7494095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 7491667 - 7491605
Alignment:
| Q |
89 |
ttgtttccattctttggcttgatagcttttaaggtggccacaaatgtaattcaaattgaagaa |
151 |
Q |
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| T |
7491667 |
ttgtttccattctttggcttgatactttttaaggtgatcacaaatgtaattcaaattcaagaa |
7491605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 19158076 - 19158021
Alignment:
| Q |
89 |
ttgtttccattctttggcttgatagcttttaaggtggccacaaatgtaattcaaat |
144 |
Q |
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| T |
19158076 |
ttgtttccattctttggcttgataccatttaaggtgatcataaatgtaattcaaat |
19158021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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