View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_13 (Length: 511)
Name: NF17668_low_13
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 33 - 497
Target Start/End: Complemental strand, 40530859 - 40530398
Alignment:
| Q |
33 |
gtatacttgagttgtagatttgtcagggaatcctatagttgacgtaattagacatgcaatagtgatgggtgtttttggtaaagatagtattctattccat |
132 |
Q |
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| T |
40530859 |
gtatacttgagttgtagatttgtcagggaatcctatagttgacgtaattagacatgcaatagtgatgggtgtttttggtaaagatagtattctattccat |
40530760 |
T |
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| Q |
133 |
ccttttatgcactggtttttgtggtggacctgcatcaagacaagaggggtggtcactattagacaaaataatctaatagtgacttttgtatttatccatg |
232 |
Q |
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| T |
40530759 |
ccttttatgcactggtttttgtggtggacctgcatcaagacaagaggggtggtcactattagacaaaataatctaatagtgacttttgtatttatccatg |
40530660 |
T |
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| Q |
233 |
gatacaggatacttaattgctcagcttcacggattttgaaaacaactgataacatacaatatctgatattttatatattttaaaaatacatagtattgtc |
332 |
Q |
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| T |
40530659 |
gatacaggatacttaattgctcagcttcacggattttgaaaacaactgataacatacaatatctgatattttatatattttaaaaatacatagtattgtc |
40530560 |
T |
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| Q |
333 |
tttatatgattaataattaaattggnnnnnnnnccttcttttaaaagtttggtgccttggttaatgtagatggtggattggttggattgatggccactat |
432 |
Q |
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| T |
40530559 |
tttatatgattaataattaaattggttttttttc---cttttaaaagtttggtgccttggttaatgtagatggtggattggttggattgatggccactat |
40530463 |
T |
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| Q |
433 |
tccatgaagtcatgtgacatattcattttctattactgatttttgtgtgatgatgattataaatg |
497 |
Q |
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| T |
40530462 |
tccatgaagtcatgtgacatattcattttctattactgatttttgtgtgatgatgattataaatg |
40530398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 497
Target Start/End: Complemental strand, 40530306 - 40530229
Alignment:
| Q |
421 |
gatggccactattccatgaagtcatgt--gacatattcattttctattactgatttttgtgtgatgatgattataaatg |
497 |
Q |
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| T |
40530306 |
gatggccactat-ccatgaagtcatgtttgacatcttcaatttctgctactgatttttgtgtgatgattattataaatg |
40530229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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