View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_low_15 (Length: 500)

Name: NF17668_low_15
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_low_15
NF17668_low_15
[»] chr4 (26 HSPs)
chr4 (310-482)||(8011169-8011341)
chr4 (311-439)||(8889233-8889361)
chr4 (303-439)||(5361959-5362095)
chr4 (310-439)||(17466083-17466212)
chr4 (305-439)||(36120823-36120957)
chr4 (310-410)||(7044731-7044831)
chr4 (305-439)||(13551618-13551752)
chr4 (322-439)||(9770128-9770245)
chr4 (328-439)||(9911407-9911518)
chr4 (321-439)||(23064959-23065077)
chr4 (305-438)||(13023566-13023702)
chr4 (305-383)||(6347116-6347194)
chr4 (305-439)||(10142898-10143032)
chr4 (310-439)||(5375668-5375797)
chr4 (303-410)||(18459733-18459840)
chr4 (359-439)||(37240311-37240390)
chr4 (308-410)||(7815559-7815661)
chr4 (305-383)||(24719516-24719594)
chr4 (310-409)||(4156767-4156866)
chr4 (305-377)||(7452419-7452491)
chr4 (437-485)||(18459647-18459695)
chr4 (404-439)||(4157053-4157088)
chr4 (404-439)||(17466280-17466315)
chr4 (439-473)||(7452563-7452597)
chr4 (405-442)||(5361855-5361892)
chr4 (437-485)||(6347014-6347062)
[»] chr5 (17 HSPs)
chr5 (304-439)||(19578940-19579075)
chr5 (310-439)||(18843719-18843848)
chr5 (305-439)||(21059152-21059285)
chr5 (310-439)||(43234872-43235001)
chr5 (305-439)||(18051526-18051660)
chr5 (305-439)||(22645715-22645849)
chr5 (310-431)||(20923722-20923843)
chr5 (310-439)||(38158250-38158379)
chr5 (310-438)||(23172425-23172557)
chr5 (314-424)||(27340197-27340307)
chr5 (355-439)||(19979648-19979732)
chr5 (324-439)||(41688661-41688775)
chr5 (310-380)||(19042444-19042514)
chr5 (351-437)||(20320988-20321074)
chr5 (306-379)||(24106641-24106714)
chr5 (310-372)||(20320928-20320990)
chr5 (439-484)||(26021408-26021453)
[»] chr2 (29 HSPs)
chr2 (310-485)||(25539176-25539351)
chr2 (305-439)||(31237973-31238107)
chr2 (310-439)||(35565950-35566079)
chr2 (305-439)||(30432418-30432552)
chr2 (303-435)||(23863321-23863453)
chr2 (310-438)||(31578009-31578136)
chr2 (304-439)||(20063712-20063847)
chr2 (305-439)||(1404782-1404916)
chr2 (305-439)||(36429847-36429981)
chr2 (310-485)||(19491859-19492030)
chr2 (311-442)||(15588843-15588973)
chr2 (305-412)||(1690785-1690892)
chr2 (305-379)||(17995054-17995128)
chr2 (310-405)||(16766714-16766809)
chr2 (304-366)||(15627653-15627715)
chr2 (305-409)||(5395674-5395778)
chr2 (344-408)||(31023261-31023325)
chr2 (404-439)||(13502566-13502601)
chr2 (405-439)||(1404985-1405019)
chr2 (389-439)||(1690724-1690774)
chr2 (305-411)||(15266081-15266187)
chr2 (311-378)||(27406782-27406851)
chr2 (304-393)||(27750194-27750283)
chr2 (404-438)||(31237870-31237904)
chr2 (322-410)||(13503067-13503156)
chr2 (344-409)||(34841594-34841659)
chr2 (310-350)||(29660897-29660937)
chr2 (406-438)||(34841784-34841816)
chr2 (404-432)||(36430049-36430077)
[»] chr1 (28 HSPs)
chr1 (312-482)||(17055952-17056122)
chr1 (305-439)||(9955031-9955165)
chr1 (310-439)||(12513285-12513414)
chr1 (305-432)||(21846271-21846398)
chr1 (305-439)||(13100190-13100324)
chr1 (305-439)||(41032666-41032800)
chr1 (310-439)||(13276262-13276391)
chr1 (310-439)||(19009942-19010071)
chr1 (310-439)||(23528660-23528789)
chr1 (305-439)||(9352059-9352193)
chr1 (305-439)||(9327211-9327345)
chr1 (305-439)||(18304807-18304941)
chr1 (310-381)||(30619079-30619150)
chr1 (310-439)||(42180061-42180190)
chr1 (304-439)||(25146765-25146899)
chr1 (305-438)||(16125452-16125588)
chr1 (344-439)||(17869746-17869841)
chr1 (305-410)||(18337547-18337651)
chr1 (322-439)||(9128836-9128953)
chr1 (310-382)||(14074423-14074495)
chr1 (310-410)||(27917477-27917577)
chr1 (324-371)||(18228230-18228277)
chr1 (310-380)||(12800636-12800706)
chr1 (305-410)||(24117006-24117111)
chr1 (395-439)||(32881416-32881460)
chr1 (404-438)||(16434775-16434809)
chr1 (386-424)||(18228281-18228319)
chr1 (405-439)||(47785958-47785992)
[»] scaffold0186 (1 HSPs)
scaffold0186 (305-439)||(8442-8576)
[»] chr6 (24 HSPs)
chr6 (303-439)||(30912408-30912544)
chr6 (310-439)||(26053292-26053421)
chr6 (310-439)||(26073345-26073474)
chr6 (305-439)||(27233273-27233407)
chr6 (310-439)||(17250061-17250190)
chr6 (305-431)||(6943464-6943590)
chr6 (304-439)||(11327567-11327702)
chr6 (305-439)||(17543736-17543870)
chr6 (321-439)||(23897826-23897944)
chr6 (310-439)||(15528106-15528235)
chr6 (314-439)||(22498881-22499006)
chr6 (305-439)||(7223518-7223645)
chr6 (310-438)||(7918378-7918506)
chr6 (313-439)||(19748340-19748466)
chr6 (310-438)||(2912245-2912372)
chr6 (305-435)||(10509023-10509153)
chr6 (305-439)||(17103201-17103328)
chr6 (355-439)||(21354789-21354873)
chr6 (313-383)||(3573984-3574054)
chr6 (305-380)||(5422803-5422878)
chr6 (311-398)||(18491074-18491161)
chr6 (344-408)||(4841946-4842010)
chr6 (427-485)||(3573921-3573979)
chr6 (322-382)||(8285776-8285836)
[»] chr7 (37 HSPs)
chr7 (305-439)||(26281306-26281439)
chr7 (310-446)||(22687653-22687789)
chr7 (310-439)||(24990067-24990196)
chr7 (176-273)||(7726020-7726115)
chr7 (305-439)||(24725473-24725607)
chr7 (310-439)||(5058533-5058662)
chr7 (327-439)||(8343796-8343908)
chr7 (315-439)||(11324988-11325111)
chr7 (304-439)||(39182258-39182392)
chr7 (305-435)||(14055250-14055380)
chr7 (305-435)||(14365278-14365408)
chr7 (305-438)||(8330042-8330175)
chr7 (310-439)||(8346529-8346658)
chr7 (304-439)||(7730339-7730473)
chr7 (305-439)||(27221417-27221551)
chr7 (310-439)||(5715294-5715422)
chr7 (313-430)||(8571250-8571367)
chr7 (310-439)||(11326390-11326519)
chr7 (310-439)||(44944841-44944974)
chr7 (305-439)||(9685240-9685374)
chr7 (310-439)||(4247360-4247489)
chr7 (27-117)||(7726173-7726260)
chr7 (346-439)||(1977692-1977785)
chr7 (305-439)||(17811350-17811480)
chr7 (176-280)||(7736370-7736472)
chr7 (310-425)||(21846436-21846550)
chr7 (326-439)||(27509939-27510052)
chr7 (310-409)||(30294179-30294275)
chr7 (386-448)||(20570872-20570934)
chr7 (315-435)||(26617472-26617596)
chr7 (437-484)||(21157714-21157761)
chr7 (259-300)||(7725740-7725781)
chr7 (323-379)||(4574488-4574544)
chr7 (404-439)||(8329937-8329972)
chr7 (305-383)||(21157826-21157904)
chr7 (404-438)||(26565442-26565476)
chr7 (18-62)||(7736556-7736600)
[»] chr3 (28 HSPs)
chr3 (305-439)||(29067283-29067417)
chr3 (310-485)||(24649638-24649814)
chr3 (310-439)||(20756043-20756172)
chr3 (305-439)||(28745769-28745903)
chr3 (305-439)||(24620196-24620333)
chr3 (305-439)||(8156126-8156261)
chr3 (310-439)||(3449288-3449416)
chr3 (306-431)||(21963429-21963554)
chr3 (306-431)||(21985865-21985990)
chr3 (310-439)||(39427906-39428035)
chr3 (305-439)||(17064320-17064454)
chr3 (324-436)||(22494780-22494892)
chr3 (313-432)||(30727694-30727813)
chr3 (323-431)||(22137295-22137403)
chr3 (313-439)||(22356048-22356175)
chr3 (305-410)||(15806531-15806635)
chr3 (328-410)||(10872971-10873053)
chr3 (305-439)||(25870363-25870506)
chr3 (305-410)||(27676355-27676460)
chr3 (305-400)||(17796267-17796362)
chr3 (305-400)||(17796376-17796471)
chr3 (305-400)||(19104707-19104802)
chr3 (305-400)||(19104816-19104911)
chr3 (310-383)||(28135726-28135799)
chr3 (386-439)||(42696927-42696980)
chr3 (404-439)||(17064508-17064543)
chr3 (305-400)||(17796485-17796580)
chr3 (305-400)||(19104925-19105020)
[»] chr8 (27 HSPs)
chr8 (309-438)||(3094250-3094379)
chr8 (305-439)||(5922048-5922182)
chr8 (310-437)||(45403033-45403160)
chr8 (310-439)||(15294674-15294803)
chr8 (310-439)||(15475043-15475172)
chr8 (310-439)||(17646997-17647126)
chr8 (305-439)||(11879599-11879733)
chr8 (305-439)||(11897015-11897149)
chr8 (310-439)||(19704451-19704581)
chr8 (305-439)||(31424162-31424296)
chr8 (305-439)||(27836460-27836594)
chr8 (326-439)||(29384313-29384425)
chr8 (321-439)||(22910198-22910316)
chr8 (345-442)||(6810861-6810957)
chr8 (354-439)||(23142223-23142308)
chr8 (304-381)||(477101-477178)
chr8 (305-408)||(15761466-15761569)
chr8 (323-383)||(24056620-24056680)
chr8 (305-354)||(23136348-23136397)
chr8 (326-438)||(15231744-15231856)
chr8 (310-425)||(6292352-6292467)
chr8 (305-439)||(7489279-7489414)
chr8 (404-439)||(29384205-29384240)
chr8 (336-409)||(8582000-8582073)
chr8 (395-439)||(9212251-9212295)
chr8 (305-357)||(9212296-9212348)
chr8 (406-438)||(26575017-26575049)
[»] scaffold0042 (2 HSPs)
scaffold0042 (303-439)||(93702-93836)
scaffold0042 (404-438)||(93599-93633)
[»] scaffold0510 (1 HSPs)
scaffold0510 (321-439)||(96-215)
[»] scaffold0417 (1 HSPs)
scaffold0417 (321-439)||(7451-7569)
[»] scaffold0048 (2 HSPs)
scaffold0048 (305-408)||(48816-48918)
scaffold0048 (346-408)||(61410-61472)
[»] scaffold0036 (1 HSPs)
scaffold0036 (305-383)||(37218-37296)
[»] scaffold0603 (1 HSPs)
scaffold0603 (305-383)||(9072-9150)
[»] scaffold0115 (1 HSPs)
scaffold0115 (310-379)||(35115-35184)
[»] scaffold0259 (1 HSPs)
scaffold0259 (406-438)||(18587-18619)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 310 - 482
Target Start/End: Complemental strand, 8011341 - 8011169
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || ||| |||||||||||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||     
T  8011341 ttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatgagcaaaatt 8011242  T
Q  410 catcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtc 482  Q
    |||||||||||||||| ||||| |||||||| ||||||| |||| ||||||||||||||||||||| ||||||    
T  8011241 catcgattttgattgcgattttgcgatttcaaacaaaatcgcaggattttaaagggttttgaagaattttgtc 8011169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 311 - 439
Target Start/End: Original strand, 8889233 - 8889361
Alignment:
Q  311 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 410  Q
    ||||||||| |||||||||||||||||||||| ||||||| || |||||||||| |||||||||||||| ||| |||||||||||||||| ||||||| |    
T  8889233 tgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaataggcaaaattc 8889332  T
Q  411 atcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||| |||||||||||||    
T  8889333 atcgattttgattgcgattttacgatttc 8889361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 303 - 439
Target Start/End: Complemental strand, 5362095 - 5361959
Alignment:
Q  303 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 402  Q
    |||||| |||||||||| ||||||||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||  |||||| |||||||| |    
T  5362095 tacattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaatagg 5361996  T
Q  403 caaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||| ||||||||||||||||  |||||||||||||    
T  5361995 caaaacccatcgattttgattgagattttacgatttc 5361959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 17466083 - 17466212
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    ||||||||||||| ||||||||| ||||||  | ||||||||||||||||||| ||| || ||||||||||||| ||||||||| |||||||||||||||    
T  17466083 ttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaataagcaaaatc 17466182  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    ||||||||| |||||| |||||||||||||    
T  17466183 catcgatttagattgcgattttacgatttc 17466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 36120823 - 36120957
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||||||| ||||||  ||||||  | ||||||||||||||||||||||||||||||| |||||||| ||| ||| | ||||||||||    
T  36120823 cattgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaataagca 36120922  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||| |||||||||||||||| |||||||||||||    
T  36120923 aaattcatcgattttgattgcgattttacgatttc 36120957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 7044731 - 7044831
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||   |||||||||||||||||||||||    
T  7044731 ttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataagcaaaatc 7044830  T
Q  410 c 410  Q
    |    
T  7044831 c 7044831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 13551752 - 13551618
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||  ||||||| ||||||||||  | |||||||||| ||| |||||||||||||||||||||||||  ||||||  |||||||  ||    
T  13551752 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 13551653  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||| ||||| |||||| ||||||    
T  13551652 aaatccatcgattttaattgcgattttatgatttc 13551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 322 - 439
Target Start/End: Original strand, 9770128 - 9770245
Alignment:
Q  322 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttga 421  Q
    |||||||||| |||||||| | ||||||| || ||| |||||||||||||||||||||||||  |||||||| ||||||  ||||||| ||| |||||||    
T  9770128 cgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagacaaaatctatcaattttga 9770227  T
Q  422 ttgcaattttacgatttc 439  Q
    |||| |||||||||||||    
T  9770228 ttgcgattttacgatttc 9770245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 439
Target Start/End: Complemental strand, 9911518 - 9911407
Alignment:
Q  328 aaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaa 427  Q
    |||||||||||| || |||||||| | ||||||||||||||||| |  ||||||||  |||||||| |||||  |||||||||||||||||||||||| |    
T  9911518 aaatcctaaaattcaagattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaattggcaaaatccatcgattttgattgcga 9911419  T
Q  428 ttttacgatttc 439  Q
    ||||||||||||    
T  9911418 ttttacgatttc 9911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 321 - 439
Target Start/End: Complemental strand, 23065077 - 23064959
Alignment:
Q  321 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 420  Q
    ||||||||||| ||||||||||  ||||||  | ||||||||| |||||||||||||||||||  |||||| | |||||| |  |||||||||||||||     
T  23065077 ccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaattctaaaataggtcaaatccatcgatttta 23064978  T
Q  421 attgcaattttacgatttc 439  Q
    |||||||||||||||||||    
T  23064977 attgcaattttacgatttc 23064959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 305 - 438
Target Start/End: Original strand, 13023566 - 13023702
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaa-tccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaa--taa 401  Q
    |||| |||||||||| || ||||||||||||||| |  | |||||||||| ||||||||||||||| |||||||||||||  |||||||||||||  ||     
T  13023566 cattgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaaaatag 13023665  T
Q  402 gcaaaatccatcgattttgattgcaattttacgattt 438  Q
      |||||| ||||||||||||||| ||||||||||||    
T  13023666 ataaaatcaatcgattttgattgcgattttacgattt 13023702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 6347194 - 6347116
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| | ||| || ||||||||||||||||||||||    
T  6347194 cattattgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccat 6347116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 10142898 - 10143032
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||| ||||| ||||||||||| |||||||  |  ||||||||| ||||| ||||||||| ||||||| |||||  || ||| ||||||||  ||    
T  10142898 cattgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaatagaca 10142997  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||  |||||||||||||    
T  10142998 aaatccatcgattttgattgtgattttacgatttc 10143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 5375668 - 5375797
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || || ||||| |||||||  | |||||||||| |||||||||||||||||||| |||| ||| |||||||   ||||||  ||||||     
T  5375668 ttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttcaccttcaacgactaaaattcataatagaattttaaaatagacaaaatt 5375767  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||| ||||||||| |||||||||||||    
T  5375768 catcgactttgattgcgattttacgatttc 5375797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 410
Target Start/End: Complemental strand, 18459840 - 18459733
Alignment:
Q  303 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 402  Q
    |||||| |||| ||||| |||||| ||||||||||||||| |||||||||| | | ||||| |||||||||||||||||||   ||||||| |||||| |    
T  18459840 tacattgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaatcctaaaatagg 18459741  T
Q  403 caaaatcc 410  Q
    ||||||||    
T  18459740 caaaatcc 18459733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 37240311 - 37240390
Alignment:
Q  359 ttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||||||  ||||| ||||||||| ||| ||| |||||||||||||||| |||||||||||||    
T  37240311 ttcaccttcaacgactcaaatccatagtagaa-cccaaaataggcataattcatcgattttgattgcgattttacgatttc 37240390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 410
Target Start/End: Original strand, 7815559 - 7815661
Alignment:
Q  308 tattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaa 407  Q
    |||||| ||||| ||||||||||||||||||| ||  |||||| || ||| |||| ||| | ||||||||| ||||  ||||||||||||||| ||||||    
T  7815559 tattgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattcagcttaagcgactcaaacccatagtagaatcccaaaataggcaaaa 7815658  T
Q  408 tcc 410  Q
    |||    
T  7815659 tcc 7815661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 24719516 - 24719594
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    |||| ||||||||||  |||||||| | ||||||| || |||||||||| ||| |||||||||||||||||||||||||    
T  24719516 cattgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccat 24719594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 409
Target Start/End: Original strand, 4156767 - 4156866
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||||||||||| ||||||  | ||||||  || ||| |||||||| |||||||||||||  |  |||||||| |||||||||||||||    
T  4156767 ttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaatcctaaaataagcaaaatc 4156866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 7452419 - 7452491
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaa 377  Q
    |||| |||| ||||| ||||||||||| ||||||||||  ||||||| | ||| |||||||||||||||||||    
T  7452419 cattgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactcaa 7452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 18459695 - 18459647
Alignment:
Q  437 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 485  Q
    ||||||||||||||||| |||||||| |||||||||| | |||||||||    
T  18459695 ttcatacaaaattgcaggattttaaacggttttgaaggattttgtccat 18459647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Original strand, 4157053 - 4157088
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||| |||||||||||||    
T  4157053 aaaatccatcgattttgattgcgattttacgatttc 4157088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Original strand, 17466280 - 17466315
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||||||||||| |||||    
T  17466280 aaaatccatcgattttgattgcaattttacaatttc 17466315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 473
Target Start/End: Original strand, 7452563 - 7452597
Alignment:
Q  439 catacaaaattgcagaattttaaagggttttgaag 473  Q
    ||||||||||||||| |||||||||||||||||||    
T  7452563 catacaaaattgcaggattttaaagggttttgaag 7452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 5361892 - 5361855
Alignment:
Q  405 aaatccatcgattttgattgcaattttacgatttcata 442  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  5361892 aaatccatcgactttgattgcgattttacgatttcata 5361855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 485
Target Start/End: Complemental strand, 6347062 - 6347014
Alignment:
Q  437 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 485  Q
    |||| ||||||| |||| ||||||||||||||||||| | |||||||||    
T  6347062 ttcacacaaaatcgcaggattttaaagggttttgaaggattttgtccat 6347014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 304 - 439
Target Start/End: Original strand, 19578940 - 19579075
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 403  Q
    ||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  19578940 acattgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaataagc 19579039  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||| | |||||||||||    
T  19579040 aaaatccatcgattttgattgcgactttacgatttc 19579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 18843719 - 18843848
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||| ||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||||||     
T  18843719 ttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaaatt 18843818  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||| |||||||||    
T  18843819 catcgattttgattgcaattatacgatttc 18843848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 21059285 - 21059152
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||| ||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||| |||    
T  21059285 cattgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccatg-tagaatccctaaataggca 21059187  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||| |||||||||||||||| |||||||||||||    
T  21059186 aaattcatcgattttgattgcgattttacgatttc 21059152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 43234872 - 43235001
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || |||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||  |||||||| |||||| | ||||||    
T  43234872 ttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaataggaaaaatc 43234971  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||  |||||||||||||    
T  43234972 catcgattttgattgtgattttacgatttc 43235001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 18051660 - 18051526
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||||||||||||||||||  | |||||||||| |||||||| ||||||||||||||||| ||  |||||| | |||||| |||    
T  18051660 cattgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaataggca 18051561  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| ||| |||||||||    
T  18051560 aaatccatcgattttgattgcgattgtacgatttc 18051526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 22645849 - 22645715
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||| | ||||||||  || |||||||||||||| |    
T  22645849 cattgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaataagta 22645750  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    || |||||| ||||||||||| ||||||| |||||    
T  22645749 aattccatctattttgattgcgattttacaatttc 22645715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 20923722 - 20923843
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||  ||||||||  |||||||| |||||| ||||| ||    
T  20923722 ttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaatcctaaaataggcaaagtc 20923821  T
Q  410 catcgattttgattgcaatttt 431  Q
    |||||||||||||||| |||||    
T  20923822 catcgattttgattgcgatttt 20923843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 38158379 - 38158250
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||| || |||||| |||||||||||   |||||||||||||||  |||||||    
T  38158379 ttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaatagacaaaatc 38158280  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    ||| ||||||| |||  |||||||||||||    
T  38158279 cattgattttggttgttattttacgatttc 38158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 23172557 - 23172425
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaa--- 406  Q
    |||||||||| |||||||||||||||||||  | |||||||||| |||||||| ||||||||||| ||||||||  |||||||||||||||  ||||       
T  23172557 ttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaatagacaaaatt 23172458  T
Q  407 -atccatcgattttgattgcaattttacgattt 438  Q
     ||| |||||||||||| || ||||||||||||    
T  23172457 catcgatcgattttgatcgcgattttacgattt 23172425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 314 - 424
Target Start/End: Complemental strand, 27340307 - 27340197
Alignment:
Q  314 caaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatc 413  Q
    |||||| |||||||||||| ||||||  |||||||||||| |||||||| ||||||||||||||||| ||  |||||||  |||||| ||||||| ||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaataggcaaaattcatc 27340208  T
Q  414 gattttgattg 424  Q
    |||||||||||    
T  27340207 gattttgattg 27340197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 439
Target Start/End: Original strand, 19979648 - 19979732
Alignment:
Q  355 tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||| |||||||||||||    
T  19979648 tttcttcatcttcaacgactcaaattcatggtagaatcccaaaacacgcaaaatccatggattttgattgcgattttacgatttc 19979732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 324 - 439
Target Start/End: Complemental strand, 41688775 - 41688661
Alignment:
Q  324 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgatt 423  Q
    |||||||||||||||| |  |||||||| |||||||||||||||||||||| ||||  ||  || ||| | |||||||||||||| ||||||||||||||    
T  41688775 acttaaatcctaaaattcg-gattttgcaattttcttcaccttcaacgacttaaatttatagtaaaattctaaaataagcaaaattcatcgattttgatt 41688677  T
Q  424 gcaattttacgatttc 439  Q
    || |||||||||||||    
T  41688676 gcgattttacgatttc 41688661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 19042514 - 19042444
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 380  Q
    |||||||||| || |||||||| |||||||  | ||||||| || ||||||||||||||||||||||||||    
T  19042514 ttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 20320988 - 20321074
Alignment:
Q  351 cgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatt 437  Q
    ||||||||||||||||||| |||| ||||||||  || ||| ||||||||   ||||| |||| | ||||||||| |||||||||||    
T  20320988 cgattttcttcaccttcaatgactaaaatccatagtaaaattccaaaatagataaaattcatcaactttgattgcgattttacgatt 20321074  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 24106641 - 24106714
Alignment:
Q  306 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 379  Q
    |||||||||||||| | || ||||||| |||||| || |||||||| | ||||||||||  |||||||||||||    
T  24106641 attattgtcaaaatcctgatttaaatcataaaattcaggattttgcaactttcttcaccagcaacgactcaaat 24106714  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 20320928 - 20320990
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacga 372  Q
    |||||||||| || || |||||||||||||  | |||||||| | ||||||||||||||||||    
T  20320928 ttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttcaccttcaacga 20320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 26021408 - 26021453
Alignment:
Q  439 catacaaaattgcagaattttaaagggttttgaagaactttgtcca 484  Q
    |||||||||| |||| ||||||||||||||||||| | ||||||||    
T  26021408 catacaaaatcgcaggattttaaagggttttgaaggattttgtcca 26021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 310 - 485
Target Start/End: Complemental strand, 25539351 - 25539176
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||| ||||| |||| |||||||||||||| || || ||||| |||||||||||||||||||||| ||||||||   ||||||| |||||||||||||||    
T  25539351 ttgttaaaatcccgatttaaatcctaaaattcaagaatttgcaattttcttcaccttcaacgacttaaatccataggagaatccgaaaataagcaaaatc 25539252  T
Q  410 catcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 485  Q
    |||||||||||| ||| |||| ||||||||||||||||| |||| |||||||||||||||| |||| |||||||||    
T  25539251 catcgattttgactgcgatttaacgatttcatacaaaatcgcaggattttaaagggttttgtagaattttgtccat 25539176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 31238107 - 31237973
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||| |||  |||||||  |||||| | |    
T  31238107 cattgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaataggaa 31238008  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| |||||||||||||    
T  31238007 aaatccatcgattttgattgcgattttacgatttc 31237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 35566079 - 35565950
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || |||||||||  ||||| || |||||||||| ||||||||  ||||| |||||||||||||| ||||||||||||||| ||||||||    
T  35566079 ttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaataggcaaaatc 35565980  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||| ||||||||||||    
T  35565979 catcgattttgattgcagttttacgatttc 35565950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 30432418 - 30432552
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| | || |||||| |||||||| | |||||| ||| ||||||| |||||||||||||||||||||  ||||||| |||||||  ||    
T  30432418 cattgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaatagaca 30432517  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||||||||||||||||    
T  30432518 aaatccatcgattttgattgcaattttacgatttc 30432552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 303 - 435
Target Start/End: Complemental strand, 23863453 - 23863321
Alignment:
Q  303 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 402  Q
    |||||| |||||||||| ||||||||||| |||||||| |  ||||||||| ||||||||| |||||||||| ||||||||  ||||||| ||||||| |    
T  23863453 tacattgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaatagg 23863354  T
Q  403 caaaatccatcgattttgattgcaattttacga 435  Q
    |||||||||||||||||| |||| |||||||||    
T  23863353 caaaatccatcgattttggttgcgattttacga 23863321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 310 - 438
Target Start/End: Original strand, 31578009 - 31578136
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||||||||||  ||||||  | ||||||||||||||||||||||||||||| | ||||||  | |||||||| |||||||||||||||    
T  31578009 ttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcctag-tagaatcctaaaataagcaaaatc 31578107  T
Q  410 catcgattttgattgcaattttacgattt 438  Q
    |||| ||||||||||||||||||||||||    
T  31578108 catcaattttgattgcaattttacgattt 31578136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 304 - 439
Target Start/End: Original strand, 20063712 - 20063847
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 403  Q
    ||||| |||||||||| |||||||||| ||||||||||| | ||||||| ||||||||| |||||| |||| ||||||||  ||||||||||||||| ||    
T  20063712 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggc 20063811  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||| |||||||||| ||||| |||||||| ||||    
T  20063812 aaaattcatcgattttaattgcgattttacgttttc 20063847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 1404782 - 1404916
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| ||||||||||| |||||||  | ||||||| || |||||||||||||||||||| ||||||||  |||||||| ||| || |||    
T  1404782 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcctaaactatgca 1404881  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||  |||||||||||||    
T  1404882 aaatccatcgattttgattgtgattttacgatttc 1404916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 36429847 - 36429981
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| || |||||||||||| |||| | |||||||||| ||||||||||||||||||||||| | |||   |||||| ||||||| |||    
T  36429847 cattgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaataggca 36429946  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| ||| |||||||||    
T  36429947 aaatccatcgattttgattgcgattgtacgatttc 36429981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 485
Target Start/End: Original strand, 19491859 - 19492030
Alignment:
Q  310 ttgtcaaaattccgacttaaatccta--aaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaa 407  Q
    ||||||||||  ||| ||||||||||  ||||| | |||||||||| |||||||| ||| ||||||||||||||||   ||||||| |||||| | ||||    
T  19491859 ttgtcaaaatctcgaattaaatcctataaaatctaggattttgcgactttcttcatcttaaacgactcaaatccatagcagaatcc-aaaataggtaaaa 19491957  T
Q  408 tccatcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 485  Q
    |||||||||||||||||| ||||||     ||||||||||| |||| ||||||||||||||||||||| ||| |||||    
T  19491958 tccatcgattttgattgcgatttta-----tcatacaaaatcgcaggattttaaagggttttgaagaattttatccat 19492030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 442
Target Start/End: Complemental strand, 15588973 - 15588843
Alignment:
Q  311 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 410  Q
    ||||||||| ||||||||| || |||||| || |||||||||  |||||||||||||||| |||||||| |||  ||||||| |||||||  |||||||     
T  15588973 tgtcaaaatcccgacttaa-tcttaaaattcaggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaatctcaaaatagacaaaatca 15588875  T
Q  411 atcgattttgattgcaattttacgatttcata 442  Q
    |||| |||| ||||| ||||||||||||||||    
T  15588874 atcgttttttattgcgattttacgatttcata 15588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 412
Target Start/End: Complemental strand, 1690892 - 1690785
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||| ||||||||||||| ||||||  | ||||||| || ||||||||||||| |||||||| ||||||  || |||||||||||| |||    
T  1690892 cattgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaataggca 1690793  T
Q  405 aaatccat 412  Q
    ||| ||||    
T  1690792 aaacccat 1690785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 17995054 - 17995128
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 379  Q
    |||| |||| |||||||||||||||| |||||||||||  ||||||||||||| |||||| ||||||||||||||    
T  17995054 cattgttgttaaaattccgacttaaaacctaaaatccagaattttgcgattttattcaccatcaacgactcaaat 17995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 310 - 405
Target Start/End: Original strand, 16766714 - 16766809
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 405  Q
    |||||||||||  |||||||||| ||||||  | |||||| ||||||| |||||||||||||| ||||||||||   ||||||| |||||||||||    
T  16766714 ttgtcaaaattttgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaatcctaaaataagcaa 16766809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 15627653 - 15627715
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcacctt 366  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||| | |||| ||||||||    
T  15627653 acattattgtcaaaatcccgacttaaatcctaaaatttatgattttgtggttttattcacctt 15627715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 5395778 - 5395674
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||||  ||| |||||| ||||||  | |||||||||| ||| |||| ||| || |||||||||||||   |||||| ||||||| |||    
T  5395778 cattgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatcttaaatgactcaaatccatagcagaatctcaaaataggca 5395679  T
Q  405 aaatc 409  Q
    |||||    
T  5395678 aaatc 5395674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 31023261 - 31023325
Alignment:
Q  344 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 408  Q
    |||||||||| ||| ||||| ||||||||||||||| |||  |||||||| |||||| |||||||    
T  31023261 gattttgcgactttattcactttcaacgactcaaattcatagtagaatcctaaaataggcaaaat 31023325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Complemental strand, 13502601 - 13502566
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||| |||||||||||||    
T  13502601 aaaatccatcgattttgattgcgattttacgatttc 13502566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 1404985 - 1405019
Alignment:
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||||||||||| |||||    
T  1404985 aaatccatcgattttgattgcaattttacaatttc 1405019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 1690774 - 1690724
Alignment:
Q  389 aatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||| || ||| |||| |||||||||||| |||||||||||||    
T  1690774 aatcccaaaataggcgaaacccattgattttgattgcgattttacgatttc 1690724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 411
Target Start/End: Original strand, 15266081 - 15266187
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||   || |||||||||||||| || |||||||  | ||| |||| |||||| || ||||||||||| || ||| |||||||| | |    
T  15266081 cattgttgtcaaaatcatgatttaaatcctaaaattcaggattttgtaactttattcatcttcaatgattcaaatccatgttataattccaaaataggaa 15266180  T
Q  405 aaatcca 411  Q
    |||||||    
T  15266181 aaatcca 15266187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 27406782 - 27406851
Alignment:
Q  311 tgtcaaaattccgacttaaatcctaaaatccat--gattttgcgattttcttcaccttcaacgactcaaa 378  Q
    ||||||||| |||| |||||| ||||||||  |  |||||||||||||| || |||||||||||||||||    
T  27406782 tgtcaaaatcccgaattaaattctaaaatctctaggattttgcgattttttttaccttcaacgactcaaa 27406851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 393
Target Start/End: Complemental strand, 27750283 - 27750194
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcga-ttttcttcaccttcaacgactcaaatccatgatagaatcc 393  Q
    ||||| ||||||||||  |||||||| ||| ||||| || |||||||||| ||||||| || || |||||||||||||||| | |||||||    
T  27750283 acattgttgtcaaaatcgcgacttaagtcccaaaatacaagattttgcgacttttcttaac-ttaaacgactcaaatccataacagaatcc 27750194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 31237904 - 31237870
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgattt 438  Q
    |||||||||||||||||||||||||||||| ||||    
T  31237904 aaaatccatcgattttgattgcaattttacaattt 31237870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 13503156 - 13503067
Alignment:
Q  322 cgacttaaatcctaaaa-tccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 410  Q
    ||||||||||| ||||| || | ||||||||||| || ||||| ||||||| ||||||||||| | | ||| | |||||| |||||||||    
T  13503156 cgacttaaatcttaaaaatctaggattttgcgatcttattcactttcaacggctcaaatccataacaaaattctaaaataggcaaaatcc 13503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 409
Target Start/End: Original strand, 34841594 - 34841659
Alignment:
Q  344 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||| ||||| ||| |||||||||||||||||||||||||   ||||| |||||| | ||||||||    
T  34841594 gattctgcgactttattcaccttcaacgactcaaatccataggagaataccaaaacatgcaaaatc 34841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 29660897 - 29660937
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttg 350  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  29660897 ttgtcaaaaatccgacttaaatcctaaaatctaggattttg 29660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 34841784 - 34841816
Alignment:
Q  406 aatccatcgattttgattgcaattttacgattt 438  Q
    |||||||||||||||||||| ||||||||||||    
T  34841784 aatccatcgattttgattgcgattttacgattt 34841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 432
Target Start/End: Original strand, 36430049 - 36430077
Alignment:
Q  404 aaaatccatcgattttgattgcaatttta 432  Q
    |||||||||||||||||||||||||||||    
T  36430049 aaaatccatcgattttgattgcaatttta 36430077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 312 - 482
Target Start/End: Complemental strand, 17056122 - 17055952
Alignment:
Q  312 gtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcca 411  Q
    |||||||| | || ||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||  ||||||   |||||||| ||||||||    
T  17056122 gtcaaaatcctgatttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaattttaaaataagtaaaatcca 17056023  T
Q  412 tcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtc 482  Q
    |||||||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||    
T  17056022 tcgattttgattgcgattttacgatttcatacaaaatcgcaagattttaaagggttttgaagaattttgtc 17055952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 9955165 - 9955031
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| || ||||||||||||||||  | |||||||||| |||||||||||||||||||| |||||||   |||||||||||||||||||    
T  9955165 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaataagca 9955066  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| |||||||||||||    
T  9955065 aaatccatcgattttgattgcgattttacgatttc 9955031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 12513285 - 12513414
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||| |||| | |||||||||| |||||||| ||||||||||||||||||||  || ||||  ||||||| |||||||    
T  12513285 ttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccatagtaaaatcataaaataatcaaaatc 12513384  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||| |||||||||||||    
T  12513385 catcgattttgattgcgattttacgatttc 12513414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 305 - 432
Target Start/End: Complemental strand, 21846398 - 21846271
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||  ||||||| |||||||   |    
T  21846398 cattgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaatagaaa 21846299  T
Q  405 aaatccatcgattttgattgcaatttta 432  Q
    ||||||||||||||||||||| ||||||    
T  21846298 aaatccatcgattttgattgcgatttta 21846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 13100190 - 13100324
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    ||||||||||||||| || |||||||| |||||||| | |||||| ||| ||||||||| |||||||||||||||||||  |||||||| |||||| |||    
T  13100190 cattattgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaataggca 13100289  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||| ||||||||||||||||| ||||||| |||||    
T  13100290 aaaaccatcgattttgattgcgattttacaatttc 13100324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 41032800 - 41032666
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||  ||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||  |||||| | |||||| |||    
T  41032800 cattgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaataggca 41032701  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||| ||||| ||||||| |||||    
T  41032700 aaatccatcgattttaattgcgattttacaatttc 41032666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 13276391 - 13276262
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||| ||||||||||||||| | |||||||||| |||||||| ||||||||||  ||||||||  |||||||| |||||| ||||||||    
T  13276391 ttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaataggcaaaatc 13276292  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
     ||||||||||||||| |||||||||||||    
T  13276291 aatcgattttgattgcgattttacgatttc 13276262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 19010071 - 19009942
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| | ||||||||||||||||| || |||||||||| ||| ||||||||||| |||| ||||||||  || ||| | |||||||||||||||    
T  19010071 ttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccatagtaaaattctaaaataagcaaaatc 19009972  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||| |||||||||||||    
T  19009971 catcgattttgattgcgattttacgatttc 19009942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 23528660 - 23528789
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || ||||||||| |||||| || |||||||||| |||||||| ||||||||||||||||||||  |||||||| |||||| ||||||||    
T  23528660 ttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaaatc 23528759  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
     ||||||||||| ||| |||||||||||||    
T  23528760 tatcgattttgaatgcgattttacgatttc 23528789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 9352193 - 9352059
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||   ||| ||||||||||  ||    
T  9352193 cattgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaatagaca 9352094  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||| |||||||||||||| |||||| ||||||    
T  9352093 aaatccgtcgattttgattgcgattttatgatttc 9352059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 9327345 - 9327211
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||| ||||| | |||||||||||||||||  | | |||||||| ||||| |||||||||||||||||||| ||  || ||||||||||||  ||    
T  9327345 cattgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaatagaca 9327246  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| |||||||||||||    
T  9327245 aaatccatcgattttgattgcgattttacgatttc 9327211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 18304941 - 18304807
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttc-aacgactcaaatccatgatagaatcccaaaataagc 403  Q
    |||| |||||||||| || |||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||| |||  ||||||| |||||||  |    
T  18304941 cattgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaatagac 18304842  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||| ||||||||||| | |||||||||||    
T  18304841 aaaatccatcaattttgattgcga-tttacgatttc 18304807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 30619079 - 30619150
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc 381  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30619079 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 42180190 - 42180061
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || |||||||| ||||||| || |||||||||| ||||||| |||||||||| ||||||||||  ||||||  ||||||| |||||||     
T  42180190 ttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttccccttcaacgagtcaaatccatagtagaatttcaaaataggcaaaata 42180091  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||  ||| |||||||||    
T  42180090 catcgattttgattgtgattctacgatttc 42180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 439
Target Start/End: Complemental strand, 25146899 - 25146765
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 403  Q
    ||||| |||||||||| | ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||  |    
T  25146899 acattgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaatagac 25146800  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||| | |||| ||||| ||||| | |||||||||||    
T  25146799 aaagtacatcaattttaattgcga-tttacgatttc 25146765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 305 - 438
Target Start/End: Complemental strand, 16125588 - 16125452
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttctt---caccttcaacgactcaaatccatgatagaatcccaaaataa 401  Q
    ||||||| ||||||| | ||||||||||||||||| || |||||||||| ||||||   |||||||||||||  ||||||||  || ||||  ||||||     
T  16125588 cattattttcaaaatcctgacttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaatag 16125489  T
Q  402 gcaaaatccatcgattttgattgcaattttacgattt 438  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  16125488 gcaaaatccattgattttgattgcgattttacgattt 16125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 344 - 439
Target Start/End: Complemental strand, 17869841 - 17869746
Alignment:
Q  344 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||| ||||||||||||| |||||  |||||||   |||||||| |||||| ||||||| | ||||||||||||||||||||||||||||    
T  17869841 gattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaataggcaaaattcttcgattttgattgcaattttacgatttc 17869746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 410
Target Start/End: Complemental strand, 18337651 - 18337547
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||||||| | ||||||||||| |||||||| | ||| |||||||||||||||||||||||||   |||| ||||||||| |||    
T  18337651 cattgttgtcaaaatcccgacttata-cctaaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaaccccaaaataggca 18337553  T
Q  405 aaatcc 410  Q
    ||||||    
T  18337552 aaatcc 18337547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 439
Target Start/End: Complemental strand, 9128953 - 9128836
Alignment:
Q  322 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttga 421  Q
    |||||||||||||||||   | ||| |||||| ||||||||| || ||||||||||||  ||  |||||||  ||||||  |||||| ||||||||||||    
T  9128953 cgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatcttaaaatagacaaaattcatcgattttga 9128854  T
Q  422 ttgcaattttacgatttc 439  Q
    |||| |||| ||||||||    
T  9128853 ttgcgatttgacgatttc 9128836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 14074495 - 14074423
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcca 382  Q
    |||||||||| ||| |||||||||||||||  | |||||||||| ||||||||  ||||||||||||||||||    
T  14074495 ttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatcca 14074423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 27917577 - 27917477
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||| || ||||| | |||||||||||||| || ||||||||| || ||||| |||   |||||| ||| ||||||||||||    
T  27917577 ttgtcaaaatcccgacttaaattctgaaatctaggattttgcgattttatttaccttcaacaacccaaattcatagcagaatcacaagataagcaaaatc 27917478  T
Q  410 c 410  Q
    |    
T  27917477 c 27917477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 18228230 - 18228277
Alignment:
Q  324 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacg 371  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  18228230 acttaaatcctaaaatccaagattttacgattttcatcaccttcaacg 18228277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 12800706 - 12800636
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 380  Q
    |||| ||||| || ||||||||||||||||  | |||||| ||| ||||||||| ||||||||||||||||    
T  12800706 ttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatc 12800636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 410
Target Start/End: Original strand, 24117006 - 24117111
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||||| | |||||| |||||||  | |||||| | | ||| |||||||||||||| ||||||  ||  ||||||||||||| || ||    
T  24117006 cattgttgtcaaaattccaatttaaattctaaaatttaagattttacaactttattcaccttcaacgattcaaatttatattagaatcccaaaacaaaca 24117105  T
Q  405 aaatcc 410  Q
    ||||||    
T  24117106 aaatcc 24117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 32881416 - 32881460
Alignment:
Q  395 aaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
T  32881416 aaaataggcaaaattcatcgattttgattgcgattttacgatttc 32881460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 16434775 - 16434809
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgattt 438  Q
    ||||||| |||||||||||||||||||||||||||    
T  16434775 aaaatccttcgattttgattgcaattttacgattt 16434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 424
Target Start/End: Original strand, 18228281 - 18228319
Alignment:
Q  386 tagaatcccaaaataagcaaaatccatcgattttgattg 424  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  18228281 tagaatcccaaaataggcaaaatccatcaattttgattg 18228319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 439
Target Start/End: Original strand, 47785958 - 47785992
Alignment:
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||| ||||||||||||||||||||||||    
T  47785958 aaatccatcggttttgattgcaattttacgatttc 47785992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 8442 - 8576
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  8442 cattgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaataagca 8541  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||| |||||||||||| |||||||||||||    
T  8542 aaatccattgattttgattgcgattttacgatttc 8576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 303 - 439
Target Start/End: Complemental strand, 30912544 - 30912408
Alignment:
Q  303 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 402  Q
    |||||| |||||||||| || ||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |    
T  30912544 tacattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaatagg 30912445  T
Q  403 caaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||| |||||||||||| |||||||||||||    
T  30912444 caaaatccatagattttgattgcgattttacgatttc 30912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 26053421 - 26053292
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26053421 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26053322  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||| ||||||||||  |||||||||||||    
T  26053321 catcaattttgattgtcattttacgatttc 26053292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 26073474 - 26073345
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26073474 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26073375  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||| ||||||||||  |||||||||||||    
T  26073374 catcaattttgattgtcattttacgatttc 26073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 27233407 - 27233273
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||||  |||||||||||||||  ||    
T  27233407 cattgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaatagaca 27233308  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| |||||| ||||||    
T  27233307 aaatccatcgattttgattgcgattttatgatttc 27233273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 17250061 - 17250190
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||| ||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||  ||||||||||||||| |||||||     
T  17250061 ttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaataggcaaaatt 17250160  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    ||| |||||||||||| |||||||||||||    
T  17250161 cattgattttgattgcgattttacgatttc 17250190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 431
Target Start/End: Complemental strand, 6943590 - 6943464
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||  ||||||| |||||||  ||    
T  6943590 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaatagaca 6943491  T
Q  405 aaatccatcgattttgattgcaatttt 431  Q
    |||| |||||||||||||||| |||||    
T  6943490 aaattcatcgattttgattgcgatttt 6943464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 304 - 439
Target Start/End: Complemental strand, 11327702 - 11327567
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 403  Q
    ||||| |||||||||| |||||||||| ||||||||||| | ||||||| ||||||||| |||||| |||| ||||||||  ||||||||||||||| ||    
T  11327702 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggc 11327603  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||| |||||||||| ||||| |||||||| ||||    
T  11327602 aaaattcatcgattttaattgcgattttacgttttc 11327567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 17543870 - 17543736
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||  |||||||||||||||||| || |||||||||| ||| ||||| |||||||||||||||||||  |||||||  ||||||||||    
T  17543870 cattgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatcttaaaataagca 17543771  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||| || |||||||||||| ||||||| |||||    
T  17543770 aaatctatggattttgattgcgattttactatttc 17543736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 321 - 439
Target Start/End: Original strand, 23897826 - 23897944
Alignment:
Q  321 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 420  Q
    ||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||  || ||| | |||||| || ||||||||||||||||    
T  23897826 ccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaatccatcgattttg 23897925  T
Q  421 attgcaattttacgatttc 439  Q
    ||||| |||||||||||||    
T  23897926 attgcgattttacgatttc 23897944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 15528235 - 15528106
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |||| |||  |||||||  ||||||  |||||||    
T  15528235 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaatagacaaaatc 15528136  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    ||||||||| |||||| |||||||||||||    
T  15528135 catcgatttcgattgcgattttacgatttc 15528106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 22499006 - 22498881
Alignment:
Q  314 caaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatc 413  Q
    |||||| || ||| |||||||||| ||||  ||||||||| |||||||||||| ||||||||||||||||  || |||| |||||||  |||||||||||    
T  22499006 caaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaatagacaaaatccatc 22498907  T
Q  414 gattttgattgcaattttacgatttc 439  Q
    |||||| |||||||||||||||||||    
T  22498906 gattttaattgcaattttacgatttc 22498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 7223518 - 7223645
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||||||||||||||||||  | |||||||||| |||||||||||       || ||||||||  |||||| ||||||||||||    
T  7223518 cattgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct-------cttaaatccatagtagaattccaaaataagca 7223610  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| |||||||||||||    
T  7223611 aaatccatcgattttgattgcgattttacgatttc 7223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 7918506 - 7918378
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||| ||||||| || |||||||||| ||| |||||||||||||||| ||||||||  || ||||| || ||||||||||||    
T  7918506 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagtaaaatcctaacataagcaaaatc 7918407  T
Q  410 catcgattttgattgcaattttacgattt 438  Q
     ||||||||||||||  ||||| ||||||    
T  7918406 aatcgattttgattgggattttgcgattt 7918378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 313 - 439
Target Start/End: Original strand, 19748340 - 19748466
Alignment:
Q  313 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 412  Q
    ||||||| |||||||||||| || |||||| ||||||| ||||||||||||||| || ||||||||||| |  |||||||  |||||| ||||||| |||    
T  19748340 tcaaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaataggcaaaattcat 19748439  T
Q  413 cgattttgattgcaattttacgatttc 439  Q
    ||||||||||||  |||||||||||||    
T  19748440 cgattttgattgtgattttacgatttc 19748466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 310 - 438
Target Start/End: Complemental strand, 2912372 - 2912245
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||||||||||| ||||||  | |||||||| | ||||| || ||||||||| ||||||| ||  |||||||  ||||||||||||||     
T  2912372 ttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaatc-atagtagaatcttaaaataagcaaaatt 2912274  T
Q  410 catcgattttgattgcaattttacgattt 438  Q
    |||||||||||||||||||||||||||||    
T  2912273 catcgattttgattgcaattttacgattt 2912245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 305 - 435
Target Start/End: Complemental strand, 10509153 - 10509023
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    ||||||||||||||| | ||||||||||||||||| ||  | |||| || ||||||||| ||||| |||||||||  ||  ||||||||||||||| |||    
T  10509153 cattattgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaataggca 10509054  T
Q  405 aaatccatcgattttgattgcaattttacga 435  Q
    |||| |||||||||||||| | |||||||||    
T  10509053 aaattcatcgattttgattacgattttacga 10509023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 17103201 - 17103328
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||||||||||| |||||| || ||||||||||       ||| ||||||||||||||| |||  |||||||||||||||  ||    
T  17103201 cattgttgtcaaaatcccgacttaaatcttaaaattcaggattttgcga-------cactttcaacgactcaaatgcatagtagaatcccaaaatagaca 17103293  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||| | |||||||||||||    
T  17103294 aaatccatcgattttgattacgattttacgatttc 17103328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 439
Target Start/End: Original strand, 21354789 - 21354873
Alignment:
Q  355 tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||  |||||||||||| |||| ||||| |||||||||||||    
T  21354789 tttctttaccttcaacgacttaaatccatggtagaatcccaaaatagacaaaatccatcgttttttattgcgattttacgatttc 21354873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 3574054 - 3573984
Alignment:
Q  313 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    ||||||||||||||||||| ||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  3574054 tcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 5422878 - 5422803
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 380  Q
    |||| |||||||||| ||||||||||| ||||||| ||||||||||| | ||| ||||||||||||||||||||||    
T  5422878 cattgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaatc 5422803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 18491161 - 18491074
Alignment:
Q  311 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaa 398  Q
    ||||||||| ||||||||||||||||||||||  |||||||   ||| |||||||||||||||||||||||||   ||||||||||||    
T  18491161 tgtcaaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaatcccaaaa 18491074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 4842010 - 4841946
Alignment:
Q  344 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 408  Q
    |||||||||| ||| ||||||||||||||||||||||| |   ||||||||| |||| |||||||    
T  4842010 gattttgcgactttattcaccttcaacgactcaaatccgtagcagaatcccataataggcaaaat 4841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 427 - 485
Target Start/End: Complemental strand, 3573979 - 3573921
Alignment:
Q  427 attttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 485  Q
    |||||| ||||||| |||||||||||  || |||||||||||||||||| ||| |||||    
T  3573979 attttaagatttcaaacaaaattgcatgatgttaaagggttttgaagaattttttccat 3573921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 8285836 - 8285776
Alignment:
Q  322 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcca 382  Q
    |||||||| |||||||||||| |||||||||| ||  |  | |||||||||||||||||||    
T  8285836 cgacttaagtcctaaaatccaggattttgcgacttgatctagcttcaacgactcaaatcca 8285776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 26281439 - 26281306
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  26281439 cattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataagca 26281340  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||| |||| |||| ||||||||    
T  26281339 aaatccatcgattttg-ttgcgatttaacgatttc 26281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 310 - 446
Target Start/End: Complemental strand, 22687789 - 22687653
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||||||| || || ||||||| |||||||| ||||||| ||||||||||||   |||||||||||||| ||||||||    
T  22687789 ttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaataggcaaaatc 22687690  T
Q  410 catcgattttgattgcaattttacgatttcatacaaa 446  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  22687689 catcgattttgattgcgattttacgatttcttacaaa 22687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 24990196 - 24990067
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||||||||||||||||| |||||  | ||||||| || |||||| |||| |||||||||||||||||  |||||||| |||||| ||||||||    
T  24990196 ttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaataggcaaaatc 24990097  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||||||||||||    
T  24990096 catcgattttgattgcaattttacgatttc 24990067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 7726115 - 7726020
Alignment:
Q  176 aggttgctgaatttgttcaggaaactcactttaccgtttgagatggaattatatgattcatgttggatttactccataagttgcgcatttccaatata 273  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||  ||||||||||||||    
T  7726115 aggttgctgaatttgttcaggaaactcactttaccgtttgagatagaattacatgattcatgttggatttactctataagtt--gcatttccaatata 7726020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 24725607 - 24725473
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| | |||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||  ||||||| ||||||| |||    
T  24725607 cattgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaataggca 24725508  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||| ||||||||| | |||| ||||||||    
T  24725507 aaatccatcaattttgattacgatttgacgatttc 24725473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 5058533 - 5058662
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||||||||  ||||||||  |||||||  |||||| ||||||||    
T  5058533 ttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaataggcaaaatc 5058632  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |  ||||||||||||| |||||||||||||    
T  5058633 ctacgattttgattgcgattttacgatttc 5058662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 327 - 439
Target Start/End: Complemental strand, 8343908 - 8343796
Alignment:
Q  327 taaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgca 426  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||| ||||| |||||     
T  8343908 taaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatatgaaaaatccatcaattttaattgcg 8343809  T
Q  427 attttacgatttc 439  Q
    |||||||||||||    
T  8343808 attttacgatttc 8343796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 315 - 439
Target Start/End: Original strand, 11324988 - 11325111
Alignment:
Q  315 aaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcg 414  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||| |||      
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaaaataggcaaaattcat-a 11325086  T
Q  415 attttgattgcaattttacgatttc 439  Q
    ||||||||||| | |||||||||||    
T  11325087 attttgattgcgaatttacgatttc 11325111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 304 - 439
Target Start/End: Original strand, 39182258 - 39182392
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 403  Q
    ||||| ||| |||||| | |||||||||||||||||| | |||||||||| || ||||||||||||||||| ||||||||  ||||||||||||||| ||    
T  39182258 acattgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgactt-cttcaccttcaacgactgaaatccatagtagaatcccaaaataggc 39182356  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||| |||| ||||||| |||||    
T  39182357 aaaatccatcgattttggttgcgattttacaatttc 39182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 435
Target Start/End: Original strand, 14055250 - 14055380
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||| ||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  |||||| | |||||| |||    
T  14055250 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggca 14055349  T
Q  405 aaatccatcgattttgattgcaattttacga 435  Q
    |||||||| |||||||||||| |||||||||    
T  14055350 aaatccatagattttgattgcgattttacga 14055380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 305 - 435
Target Start/End: Original strand, 14365278 - 14365408
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||| ||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  |||||| | |||||| |||    
T  14365278 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggca 14365377  T
Q  405 aaatccatcgattttgattgcaattttacga 435  Q
    |||||||| |||||||||||| |||||||||    
T  14365378 aaatccatagattttgattgcgattttacga 14365408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 305 - 438
Target Start/End: Complemental strand, 8330175 - 8330042
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| | ||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||||| | |    
T  8330175 cattgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaataggaa 8330076  T
Q  405 aaatccatcgattttgattgcaattttacgattt 438  Q
    |||| ||| |||||| ||||| ||||||||||||    
T  8330075 aaattcattgattttaattgcgattttacgattt 8330042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 8346658 - 8346529
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| | ||| |||||  ||||||  | |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| | ||||||    
T  8346658 ttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataggaaaaatc 8346559  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||| ||||| |||||||||||||    
T  8346558 catcgattttaattgcgattttacgatttc 8346529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 304 - 439
Target Start/End: Complemental strand, 7730473 - 7730339
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 403  Q
    ||||| |||||||||| | |||||||||||||||||||| | |||||||| |||||||||||| ||| |||||||||||   |||||| |||||||| |     
T  7730473 acattgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttcacctttaacaactcaaatccacagtagaattccaaaatagga 7730375  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||  |||||||||||||    
T  7730374 aaaatccatcgattttgattgagattttacgatttc 7730339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 27221417 - 27221551
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||| ||||| || |||||||| ||||||| || |||||||||| |||||||| |||||||||||||||| |||  |||||||  |||||  |||    
T  27221417 cattgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatcttaaaattggca 27221516  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| |||||||||||||    
T  27221517 aaatccatcgattttgattgcgattttacgatttc 27221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 5715294 - 5715422
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||||||| || |||||||||| ||| | |||||||||| ||| |||| |||  |||||| ||||||||||||||||     
T  5715294 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt-tacaccttcaacaacttaaattcatagtagaattccaaaataagcaaaatt 5715392  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||  |||||||||||||    
T  5715393 catcgattttgattgtgattttacgatttc 5715422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 313 - 430
Target Start/End: Original strand, 8571250 - 8571367
Alignment:
Q  313 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 412  Q
    ||||||| |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||  |||||||| ||||||   |||| ||||    
T  8571250 tcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaatcctaaaatagagaaaaaccat 8571349  T
Q  413 cgattttgattgcaattt 430  Q
    ||||||||||||| ||||    
T  8571350 cgattttgattgcgattt 8571367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 11326390 - 11326519
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || ||||||||||||||||  | |||||||||| |||||||||||||| ||||| ||||||||  |||||||  |||||| ||||||||    
T  11326390 ttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaataggcaaaatc 11326489  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
     ||||||||||||||| ||||||| |||||    
T  11326490 tatcgattttgattgcgattttacaatttc 11326519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 44944974 - 44944841
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcac----cttcaacgactcaaatccatgatagaatcccaaaataagcaa 405  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||||||    ||||||||| ||||||||||  |||||||| ||||||  |||    
T  44944974 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaatagtcaa 44944875  T
Q  406 aatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||  ||||||| |||||    
T  44944874 aatccatcgattttgattgggattttactatttc 44944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 9685374 - 9685240
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||  ||||||| ||||||||||  | |||||||||| ||| |||||||||||||||||||||||||  ||||||  |||||||  ||    
T  9685374 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 9685275  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||| ||||| |||||| ||||||    
T  9685274 aaatccatcgattttaattgcgattttatgatttc 9685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 4247360 - 4247489
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || | |||||||||||||| || |||||||  | ||||||||| |||||| ||| ||||||||  ||||||||||||||| |||||||     
T  4247360 ttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaataggcaaaatt 4247459  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||| |||||| ||||||    
T  4247460 catcgattttgattgcgattttatgatttc 4247489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 7726260 - 7726173
Alignment:
Q  27 tggggatattgacctcacatctttactctagtttctgcttaatataaatacgacgtcgtgtttcttgtaatttcagcgatgaagttgcatg 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||| |||||| ||||||||    
T  7726260 tggggatattgaccccacatctttactctagtttctgcttaatataaat---acggcgtgtttcttgtaatttcatcgatgaggttgcatg 7726173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 439
Target Start/End: Original strand, 1977692 - 1977785
Alignment:
Q  346 ttttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||| | |||||||||||||||||||||||  |||||||| |||||| ||||||| | |||||||||||||| |||||| ||||||    
T  1977692 ttttgcgattttttccaccttcaacgactcaaatccatagtagaatcctaaaatatgcaaaattcgtcgattttgattgcgattttaggatttc 1977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 17811350 - 17811480
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||||||||||||     |||||| | |||||||| || ||| |||||||||||||||||||||||||  ||||||   ||||||  ||    
T  17811350 catttttgtcaaaattccgacttat----taaaattcttgattttgtgacttttttcaccttcaacgactcaaatccatagtagaattttaaaatagaca 17811445  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||| ||||||||||||||| |||||||||||||    
T  17811446 aaatcgatcgattttgattgcgattttacgatttc 17811480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 7736472 - 7736370
Alignment:
Q  176 aggttgctgaatttgttcaggaaactcactttaccgtttgagatggaattatatgattcatgttggatttactccataagttgcgcatttccaatatatg 275  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||   ||| |||||||||  ||||||||||||| ||||||  | |||||||||||||||    
T  7736472 aggttactgaatttgatcaggaaacttactttaccgtttgagaaataatcatatgattccggttggatttactctataagt--cacatttccaatatatg 7736375  T
Q  276 catat 280  Q
    |||||    
T  7736374 catat 7736370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 21846550 - 21846436
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||| ||||||| || |||||||||| ||| ||||| |||||||||||| ||||||  |||||| | |||| | | ||||||    
T  21846550 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactcacatccatagtagaattctaaaacaggtaaaatc 21846452  T
Q  410 catcgattttgattgc 425  Q
     |||||||||||||||    
T  21846451 aatcgattttgattgc 21846436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 27510052 - 27509939
Alignment:
Q  326 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 425  Q
    |||||| |||||||  | |||||||||||||||||||| | |||||| ||||||| ||  ||||||   |||||| ||||||| |||| |||||||||||    
T  27510052 ttaaattctaaaataaaggattttgcgattttcttcacatccaacgattcaaatctatagtagaatttaaaaataggcaaaattcatcaattttgattgc 27509953  T
Q  426 aattttacgatttc 439  Q
     |||||||||||||    
T  27509952 gattttacgatttc 27509939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 409
Target Start/End: Original strand, 30294179 - 30294275
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| || ||||||||||||||||||| ||||||| |||||| ||||||||   ||||||||||||||   | |||| ||||||| ||||||||    
T  30294179 ttgtcaaaatcccaacttaaatcctaaaatccaggattttgtgattttattcacctt---cgactcaaatccatagcaaaatctcaaaataggcaaaatc 30294275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 20570934 - 20570872
Alignment:
Q  386 tagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttcatacaaaat 448  Q
    |||||||  ||||||  ||||||||||||||||||||||||||||||||||||| || |||||    
T  20570934 tagaatctaaaaatagacaaaatccatcgattttgattgcaattttacgatttcttataaaat 20570872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 435
Target Start/End: Complemental strand, 26617596 - 26617472
Alignment:
Q  315 aaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc--atgatagaatcccaaa--ataagcaaaatcc 410  Q
    ||||||| ||||| ||||||||||| || |||||||||| ||| |||||||||||||||  |||| |  ||  |||||| | |||  ||| ||||||||     
T  26617596 aaaattctgactttaatcctaaaattcaggattttgcgacttttttcaccttcaacgacataaattcatatagtagaattctaaaatataggcaaaatct 26617497  T
Q  411 atcgattttgattgcaattttacga 435  Q
    ||||||||||||||| |||||||||    
T  26617496 atcgattttgattgcgattttacga 26617472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 484
Target Start/End: Complemental strand, 21157761 - 21157714
Alignment:
Q  437 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtcca 484  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  21157761 ttcatacaaaatcgcagaattttaaaggattttgaagaattttgtcca 21157714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 7725781 - 7725740
Alignment:
Q  259 cgcatttccaatatatgcatatgaagtagctatgatgtgttt 300  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  7725781 cgcatttccaatatatgcatattaagtaggtatgatgtgttt 7725740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 4574488 - 4574544
Alignment:
Q  323 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 379  Q
    ||||||||||||||||||||  ||||||||| |||  ||||||||||||| ||||||    
T  4574488 gacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaat 4574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Complemental strand, 8329972 - 8329937
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8329972 aaaatccattgattttgattgcaattttacgatttc 8329937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 21157904 - 21157826
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    |||| ||||| |||||| |||||||||| |||||| || | |||||||| |||  |||| | |||||||||||||||||    
T  21157904 cattgttgtcgaaattctgacttaaatcttaaaattcagggttttgcgactttactcacttacaacgactcaaatccat 21157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 26565476 - 26565442
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgattt 438  Q
    |||||||||| ||||||||||||||||||||||||    
T  26565476 aaaatccatcaattttgattgcaattttacgattt 26565442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 7736600 - 7736556
Alignment:
Q  18 ctttggtcatggggatattgacctcacatctttactctagtttct 62  Q
    ||||| |||||||||||||||| |||||| || ||||||||||||    
T  7736600 ctttgttcatggggatattgacttcacatattcactctagtttct 7736556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 29067283 - 29067417
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| ||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||    
T  29067283 cattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatagaca 29067382  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||  |||||||||||||    
T  29067383 aaatccatcgattttgattgtgattttacgatttc 29067417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 310 - 485
Target Start/End: Complemental strand, 24649814 - 24649638
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaat-aagcaaaat 408  Q
    |||||||||| |||||||||||| ||||||| | ||||||  || || ||||||||||||||||||||||||||  |||||| ||||||| |||||||||    
T  24649814 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaataaagcaaaat 24649715  T
Q  409 ccatcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 485  Q
     |||| ||||||| ||  ||||||||||||||||||| || |||| ||||||||||||||||||||| ||| |||||    
T  24649714 tcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatccat 24649638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 20756043 - 20756172
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||||||||||  |||||| || |||||||||||||||||||||||||| |||||||||||||  |||||||  |||||| ||||||||    
T  20756043 ttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaataggcaaaatc 20756142  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
     |||||||||||||||||||||||||||||    
T  20756143 aatcgattttgattgcaattttacgatttc 20756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 28745769 - 28745903
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||| ||||||||||||||  | |||||||||| ||||||||||||||||||||||||| |||  ||||||| |||||||  ||    
T  28745769 cattgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaatagaca 28745868  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||| |||||||||||||||| |||||||||||||    
T  28745869 aaattcatcgattttgattgcgattttacgatttc 28745903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 24620333 - 24620196
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgat---tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataa 401  Q
    |||| ||||||||||||||||||||||||||||||  | ||||||||||    ||||||||||||||||||||||||| ||   ||||||| |||||||     
T  24620333 cattgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgacgactttcttcaccttcaacgactcaaattcacagtagaatctcaaaatag 24620234  T
Q  402 gcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  24620233 gcaaaattcatcgattttaattgcaattttacgatttc 24620196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 8156261 - 8156126
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag-c 403  Q
    |||| |||||||||| || |||||||| ||||||| ||  ||||| ||||||| ||||||||||| |||||||||||||  || ||||||||||| || |    
T  8156261 cattgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaattagac 8156162  T
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||| |||||||||||||    
T  8156161 aaaatccatcgattttgattgcgattttacgatttc 8156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 3449416 - 3449288
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||| |||||||||| || ||||| ||  |||||||| |||||| ||||||||    
T  3449416 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaataggcaaaatc 3449318  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    ||| |||||| ||||| |||||||||||||    
T  3449317 catagatttttattgcgattttacgatttc 3449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 306 - 431
Target Start/End: Original strand, 21963429 - 21963554
Alignment:
Q  306 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 405  Q
    |||||| | ||||| ||||||||||||||||||| || |||||| ||| |||||||||||| ||||||||||||||||  || ||||| |||||| ||||    
T  21963429 attatttttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaa 21963528  T
Q  406 aatccatcgattttgattgcaatttt 431  Q
    ||||||||||||||||| || |||||    
T  21963529 aatccatcgattttgatagcgatttt 21963554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 306 - 431
Target Start/End: Original strand, 21985865 - 21985990
Alignment:
Q  306 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 405  Q
    |||||| | ||||| ||||||||||||||||||| || |||||| ||| |||||||||||| ||||||||||||||||  || ||||| |||||| ||||    
T  21985865 attatttttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaa 21985964  T
Q  406 aatccatcgattttgattgcaatttt 431  Q
    ||||||||||||||||| || |||||    
T  21985965 aatccatcgattttgatagcgatttt 21985990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 39427906 - 39428035
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||| |||| ||||||  ||||||||  |||||||| | ||||||||| |||||||||||||||| ||  |||||||||||||||  |||| ||    
T  39427906 ttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttcacgttcaacgactcaaatcgatagtagaatcccaaaatagacaaagtc 39428005  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||| |||||||||||||    
T  39428006 catcgattttgattgcgattttacgatttc 39428035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 17064320 - 17064454
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    ||||| ||||||||| |||||||||||| |||||| || |||||||||||| | ||||||||||||||||| ||| |||  |||||| | ||||||  ||    
T  17064320 cattaatgtcaaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaatagaca 17064419  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||| |||||||||| ||||| |||||||||||||    
T  17064420 aaattcatcgatttttattgcgattttacgatttc 17064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 324 - 436
Target Start/End: Complemental strand, 22494892 - 22494780
Alignment:
Q  324 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgatt 423  Q
    |||||||||||||||||   |||||||||| ||| |||||||||||||||| |||| |||  |||||||| ||||||| |||||| ||||||||||||||    
T  22494892 acttaaatcctaaaatctgagattttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaataaacaaaattcatcgattttgatt 22494793  T
Q  424 gcaattttacgat 436  Q
    || ||||||||||    
T  22494792 gcgattttacgat 22494780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 432
Target Start/End: Complemental strand, 30727813 - 30727694
Alignment:
Q  313 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 412  Q
    ||||||| | |||||||||| ||||||||   ||||| ||| |||||||||||||||||||||||||| ||  |||||||||||||||  |||||| |||    
T  30727813 tcaaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaatagacaaaattcat 30727714  T
Q  413 cgattttgattgcaatttta 432  Q
    ||||||||||||| ||||||    
T  30727713 cgattttgattgcgatttta 30727694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 323 - 431
Target Start/End: Original strand, 22137295 - 22137403
Alignment:
Q  323 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgat 422  Q
    ||||||||||||||||| || ||| || ||| |||||||||||| |||| |||||||||||  || |||||||||||| |||||||||||||||||| ||    
T  22137295 gacttaaatcctaaaattcaagatgttacgactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaatatgcaaaatccatcgattttaat 22137394  T
Q  423 tgcaatttt 431  Q
    ||| |||||    
T  22137395 tgcgatttt 22137403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 439
Target Start/End: Complemental strand, 22356175 - 22356048
Alignment:
Q  313 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttctt-caccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcca 411  Q
    ||||||||||||||||||||||||||| || ||||||  |||||| || || ||||||| | |  ||| |||  |||||||| |||||||||||||||||    
T  22356175 tcaaaattccgacttaaatcctaaaattcaggattttaagattttttttcagcttcaacaatttgaattcatagtagaatcctaaaataagcaaaatcca 22356076  T
Q  412 tcgattttgattgcaattttacgatttc 439  Q
    |  ||||||||||| |||||||||||||    
T  22356075 tgaattttgattgcgattttacgatttc 22356048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 410
Target Start/End: Complemental strand, 15806635 - 15806531
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| ||||||||||||||| ||||||  ||||||||| ||| ||||||||||| |||||||||||||   |||||||||||| | |||    
T  15806635 cattgttgtcaaaat-ccgacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaatcccaaaacaggca 15806537  T
Q  405 aaatcc 410  Q
    ||||||    
T  15806536 aaatcc 15806531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 10873053 - 10872971
Alignment:
Q  328 aaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 410  Q
    ||||||||||||||| ||||||| ||| || |||||||||||||||||||||||||   |||||| ||||||| |||||||||    
T  10873053 aaatcctaaaatccaggattttgtgatattattcaccttcaacgactcaaatccatagcagaatctcaaaataggcaaaatcc 10872971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 25870506 - 25870363
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacga----ctcaaatccatgatagaatcccaaaata 400  Q
    |||| ||||||||||  ||||||||||||||||||||| ||||||| || |||||||| |||||||||    ||||||| | |  ||||| | |||||||    
T  25870506 cattgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacgaacgactcaaattcgtagtagaacctcaaaata 25870407  T
Q  401 agcaaaatccatcg-----attttgattgcaattttacgatttc 439  Q
     |||||||||||||     ||||||||||| |||||||||||||    
T  25870406 ggcaaaatccatcgatttgattttgattgcgattttacgatttc 25870363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 410
Target Start/End: Original strand, 27676355 - 27676460
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| | |||||||||| |||||| || |||||||||| ||| ||||||||| | |||||||||||||   |||||||||||||| | |    
T  27676355 cattgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaataggta 27676454  T
Q  405 aaatcc 410  Q
    ||||||    
T  27676455 aaatcc 27676460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 17796267 - 17796362
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 400  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||| || ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  17796267 cattattgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 17796362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 17796376 - 17796471
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 400  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||| ||| ||| |||| ||||||| |||||||| |||   ||||||| ||||||    
T  17796376 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 17796471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 19104707 - 19104802
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 400  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||| || ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  19104707 cattattgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 19104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 19104816 - 19104911
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 400  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||| ||| ||| |||| ||||||| |||||||| |||   ||||||| ||||||    
T  19104816 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 19104911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 28135726 - 28135799
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    ||||||||||||||| ||||||| |||||| || |||||||||| ||| ||||| ||||  |||||||||||||    
T  28135726 ttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattcactttcagtgactcaaatccat 28135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 42696927 - 42696980
Alignment:
Q  386 tagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||    
T  42696927 tagaatctcaaaataggcaaaattcatcgattttgattgcgattttacgatttc 42696980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Original strand, 17064508 - 17064543
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||||||||||| |||||    
T  17064508 aaaatccatcgattttgattgcaattttacaatttc 17064543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 17796485 - 17796580
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 400  Q
    |||| ||||||||||| ||| ||||||| ||||||| | |||||| ||| ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  17796485 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 17796580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 19104925 - 19105020
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 400  Q
    |||| ||||||||||| ||| ||||||| ||||||| | |||||| ||| ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  19104925 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 19105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 309 - 438
Target Start/End: Complemental strand, 3094379 - 3094250
Alignment:
Q  309 attgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 408  Q
    |||||||||||| ||||||||||| |||||| || |||||||| | |||||||||||||||||||||||||||||  |||||||| |||||| |||||||    
T  3094379 attgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 3094280  T
Q  409 ccatcgattttgattgcaattttacgattt 438  Q
    ||||||||||||||||| ||||||||||||    
T  3094279 ccatcgattttgattgcgattttacgattt 3094250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 5922048 - 5922182
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||||| | ||||||  |||||||||||||||  ||    
T  5922048 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaatagaca 5922147  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||||||||||||||| ||||| |||||||    
T  5922148 aaatccatcgattttgattgcgattttgcgatttc 5922182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 45403033 - 45403160
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    ||||||||||  |||||||||| |||||||||| |||||||||| |||||| ||||||||||||| ||||||||   |||||| ||||||||||||||||    
T  45403033 ttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaataagcaaaatc 45403132  T
Q  410 catcgattttgattgcaattttacgatt 437  Q
    |||||||||||||||| |||||||||||    
T  45403133 catcgattttgattgcgattttacgatt 45403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 15294674 - 15294803
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  15294674 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15294773  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||| ||||||| |||||    
T  15294774 catcgattttgattgcgattttacaatttc 15294803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 15475043 - 15475172
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  15475043 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15475142  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||| ||||||| |||||    
T  15475143 catcgattttgattgcgattttacaatttc 15475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 17646997 - 17647126
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    ||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||| | |||||     
T  17646997 ttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaataggaaaaatt 17647096  T
Q  410 catcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||  |||| ||||||||    
T  17647097 catcgattttgattgttatttaacgatttc 17647126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 11879599 - 11879733
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||| | ||||||||| |||||||||||||||| ||  |||||||| |||||| | |    
T  11879599 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11879698  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||| |||||||||||||||| |||||||||||||    
T  11879699 aaattcatcgattttgattgcgattttacgatttc 11879733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 11897015 - 11897149
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||| | ||||||||| |||||||||||||||| ||  |||||||| |||||| | |    
T  11897015 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11897114  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||| |||||||||||||||| |||||||||||||    
T  11897115 aaattcatcgattttgattgcgattttacgatttc 11897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 310 - 439
Target Start/End: Complemental strand, 19704581 - 19704451
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgatttt-gcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 408  Q
    |||||||||| || ||||||||| |||||| || | |||| |||| |||||||||||||||||||||||||||||  |||||| ||| |||| |||||||    
T  19704581 ttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttcaccttcaacgactcaaatccatagtagaattccataataggcaaaat 19704482  T
Q  409 ccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||||||||||||    
T  19704481 ccatcgattttgattgcaattttacgatttc 19704451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 305 - 439
Target Start/End: Original strand, 31424162 - 31424296
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    ||||||||||||||| | ||||||||| ||||||| || |||||| ||| ||||||| | |||||||||||||||||||   |||||||||||||| |||    
T  31424162 cattattgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaataggca 31424261  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||| |||||||||||| |||||||||||||    
T  31424262 aaatccattgattttgattgcgattttacgatttc 31424296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 27836594 - 27836460
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||||  ||||| |||||||||| || ||||||||| |||| |||||||||||| ||| ||||||||  |||||| | ||||||||||    
T  27836594 cattgttgtcaaaattcaaacttagatcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaataagca 27836495  T
Q  405 aaatccatcgattttgattgcaattttacgatttc 439  Q
    |||| |||| ||||||||| ||||||||| |||||    
T  27836494 aaattcatcaattttgattacaattttacaatttc 27836460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 29384425 - 29384313
Alignment:
Q  326 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 425  Q
    |||||||||||||||   |||||||||| |||||||||||||||||||||||||||||  || ||||| |||||| ||||||| |||||| |||||||||    
T  29384425 ttaaatcctaaaatcttagattttgcgactttcttcaccttcaacgactcaaatccatagtataatccaaaaataggcaaaattcatcga-tttgattgc 29384327  T
Q  426 aattttacgatttc 439  Q
     |||||||||||||    
T  29384326 gattttacgatttc 29384313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 321 - 439
Target Start/End: Complemental strand, 22910316 - 22910198
Alignment:
Q  321 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 420  Q
    |||||||||||||||||||  | |||||| ||| ||||||||| |||||||||||||||| ||  |||||||  |||||| ||||||||||| |||||||    
T  22910316 ccgacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatcttaaaataggcaaaatccattgattttg 22910217  T
Q  421 attgcaattttacgatttc 439  Q
    ||||| |||||| ||||||    
T  22910216 attgcgattttaagatttc 22910198  T

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Target: chr8; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 442
Target Start/End: Original strand, 6810861 - 6810957
Alignment:
Q  345 attttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttcata 442  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||||   |||||| ||||||| |||||||||||||| | ||||||||||||||||    
T  6810861 attttgcgactttcttcaccttcaacgactcaaatccatagtagaattttaaaataggcaaaat-catcgattttgattacgattttacgatttcata 6810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 439
Target Start/End: Original strand, 23142223 - 23142308
Alignment:
Q  354 ttttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    ||||||||| ||||||||||| ||||||||  |||||||| |||||| ||||||| |||||||||||||||| |||||||||||||    
T  23142223 ttttcttcaacttcaacgactgaaatccatagtagaatcctaaaataggcaaaattcatcgattttgattgcgattttacgatttc 23142308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 477178 - 477101
Alignment:
Q  304 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc 381  Q
    ||||| |||||||||| | |||||||||||||||||||| ||||||| || ||||||||||||||| |||| ||||||    
T  477178 acattgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

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Target: chr8; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 15761569 - 15761466
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| ||||||||||  |||||||||||||||| |||| ||||||| || ||| || |||||||||||||||||| |||   | |||||||||||| |||    
T  15761569 cattgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatagcaaaatcccaaaataggca 15761470  T
Q  405 aaat 408  Q
    ||||    
T  15761469 aaat 15761466  T

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Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 383
Target Start/End: Complemental strand, 24056680 - 24056620
Alignment:
Q  323 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    |||||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||||||    
T  24056680 gacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccat 24056620  T

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Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 23136348 - 23136397
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgat 354  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||    
T  23136348 cattattgtcaaaatcccgacttaaatcctaaaattcaggattttgcgat 23136397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 438
Target Start/End: Original strand, 15231744 - 15231856
Alignment:
Q  326 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 425  Q
    |||||||||||| |  | ||||||||||| ||||||||||||||||||| |||| |||  || ||||  |||||| |||||||||| |   |||||||||    
T  15231744 ttaaatcctaaactttaagattttgcgatgttcttcaccttcaacgactgaaattcatactaaaatcttaaaataggcaaaatccaacatatttgattgc 15231843  T
Q  426 aattttacgattt 438  Q
     ||||||| ||||    
T  15231844 gattttacaattt 15231856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 6292467 - 6292352
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||| ||||| |||||||||||| ||||||  | ||||||| || ||| |||| ||| ||||||||||| ||||  || ||| | |||||||| |||||     
T  6292467 ttgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttcatctttaacgactcaaacccatagtataattctaaaataagaaaaatt 6292368  T
Q  410 catcgattttgattgc 425  Q
    || |||||||||||||    
T  6292367 caacgattttgattgc 6292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 439
Target Start/End: Complemental strand, 7489414 - 7489279
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcc----caaaata 400  Q
    ||||||||||||||| || | ||||||| |||||| ||  |||||||   |||||||||||||||||||| |||||| |  |||||| |     ||||||    
T  7489414 cattattgtcaaaatccccaattaaatcgtaaaatacagaattttgc---tttcttcaccttcaacgactaaaatccgtagtagaattctaaataaaata 7489318  T
Q  401 agcaaaatccatcgattttgattgcaattttacgatttc 439  Q
      ||||||  |||||||||||||||||||||| ||||||    
T  7489317 gacaaaatttatcgattttgattgcaattttatgatttc 7489279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 439
Target Start/End: Complemental strand, 29384240 - 29384205
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||||||||||||||||||| |||||||||||||    
T  29384240 aaaatccatcgattttgattgcgattttacgatttc 29384205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 8582000 - 8582073
Alignment:
Q  336 aaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 409  Q
    |||||||||||||||||  ||| |||||||| || ||||||||| ||| | ||||||| |||||| | ||||||    
T  8582000 aaatccatgattttgcgtctttgttcacctttaatgactcaaattcataacagaatcctaaaatagggaaaatc 8582073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 9212295 - 9212251
Alignment:
Q  395 aaaataagcaaaatccatcgattttgattgcaattttacgatttc 439  Q
    |||||| | |||||||||||||||||||||| |||||| ||||||    
T  9212295 aaaataggaaaaatccatcgattttgattgcgattttaagatttc 9212251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 9212348 - 9212296
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgatttt 357  Q
    |||| ||||||||||||  ||||||||||||||||| | | ||||||||||||    
T  9212348 cattgttgtcaaaattctcacttaaatcctaaaatctaggtttttgcgatttt 9212296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 438
Target Start/End: Complemental strand, 26575049 - 26575017
Alignment:
Q  406 aatccatcgattttgattgcaattttacgattt 438  Q
    |||||||||||||||||||| ||||||||||||    
T  26575049 aatccatcgattttgattgctattttacgattt 26575017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 439
Target Start/End: Complemental strand, 93836 - 93702
Alignment:
Q  303 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 402  Q
    |||||| |||||||||| ||||||||||||||||||||||  ||||||  |||||||||||| ||||| ||||||||||||   ||||| | |||||| |    
T  93836 tacattgttgtcaaaatcccgacttaaatcctaaaatccagaattttg--attttcttcaccctcaacaactcaaatccatagaagaattctaaaatagg 93739  T
Q  403 caaaatccatcgattttgattgcaattttacgatttc 439  Q
    | ||||||||||||||||||||| |||||||||||||    
T  93738 cgaaatccatcgattttgattgcgattttacgatttc 93702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 93633 - 93599
Alignment:
Q  404 aaaatccatcgattttgattgcaattttacgattt 438  Q
    |||||||||||||||||||||| ||||||||||||    
T  93633 aaaatccatcgattttgattgcgattttacgattt 93599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 321 - 439
Target Start/End: Complemental strand, 215 - 96
Alignment:
Q  321 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc-aaaatccatcgatttt 419  Q
    ||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||  || ||| | |||||| || ||||||||||||||||    
T  215 ccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaaatccatcgatttt 116  T
Q  420 gattgcaattttacgatttc 439  Q
    |||||  ||||||| |||||    
T  115 gattgagattttacaatttc 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 321 - 439
Target Start/End: Complemental strand, 7569 - 7451
Alignment:
Q  321 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 420  Q
    ||||||||||| ||||||| || |||||||||| |||||| |||||||||||   ||||||||  |||||||| |||||| ||||||| ||||||||||     
T  7569 ccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaataggcaaaattcatcgatttta 7470  T
Q  421 attgcaattttacgatttc 439  Q
    ||||| |||||||||||||    
T  7469 attgcgattttacgatttc 7451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 48918 - 48816
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 404  Q
    |||| |||| |||||||||||||||||||||||||| |  ||||||| | ||| |||||||||||||||||||||||||   |||||||||||| |||||    
T  48918 cattgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccatatgagaatcccaaaa-aagca 48820  T
Q  405 aaat 408  Q
    ||||    
T  48819 aaat 48816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 61472 - 61410
Alignment:
Q  346 ttttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 408  Q
    |||||||| ||| ||| |||||||||  ||||||||||   ||||||||||||||||||||||    
T  61472 ttttgcgactttattcgccttcaacggttcaaatccatatgagaatcccaaaataagcaaaat 61410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 37296 - 37218
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    |||| |||||||||| |||||||||||  |||||| ||  ||||||| ||||| |||||||||||| ||||||||||||    
T  37296 cattgttgtcaaaatgccgacttaaattttaaaattcagaattttgcaattttattcaccttcaacaactcaaatccat 37218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 9150 - 9072
Alignment:
Q  305 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 383  Q
    |||| |||||||||| | || ||||||  ||||||  | ||||||| |||||| |||||||||||||||||||||||||    
T  9150 cattgttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccat 9072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 35184 - 35115
Alignment:
Q  310 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 379  Q
    ||||||||||  |||||||||| ||||||| ||| ||||||  | ||| |||||||| ||||||||||||    
T  35184 ttgtcaaaatctcgacttaaattctaaaattcataattttggaactttattcacctttaacgactcaaat 35115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 18587 - 18619
Alignment:
Q  406 aatccatcgattttgattgcaattttacgattt 438  Q
    |||||||| ||||||||||||||||||||||||    
T  18587 aatccatctattttgattgcaattttacgattt 18619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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