View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_low_16 (Length: 485)

Name: NF17668_low_16
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_low_16
NF17668_low_16
[»] chr3 (5 HSPs)
chr3 (7-463)||(36280768-36281226)
chr3 (104-404)||(7129924-7130227)
chr3 (117-409)||(6820618-6820907)
chr3 (362-397)||(48352158-48352193)
chr3 (349-398)||(26955807-26955856)
[»] chr4 (2 HSPs)
chr4 (102-258)||(1072450-1072606)
chr4 (335-404)||(1072686-1072755)
[»] chr8 (2 HSPs)
chr8 (127-463)||(33178045-33178381)
chr8 (342-399)||(15038747-15038804)
[»] chr1 (3 HSPs)
chr1 (347-463)||(16305297-16305411)
chr1 (362-397)||(48710362-48710397)
chr1 (362-398)||(13216975-13217011)
[»] chr5 (2 HSPs)
chr5 (362-397)||(27515880-27515915)
chr5 (362-398)||(42918027-42918063)
[»] chr6 (1 HSPs)
chr6 (342-407)||(2845423-2845488)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 36281226 - 36280768
Alignment:
Q  7 catttgacaaattttctaatattattttagccacgtcgtatggtgttatgtgctcatggtggtatgtgcttgttaggggtaggaaggggcggttgtgtgt 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36281226 catttgacaaattttctaatattattttagccacgtcatatggtgttatgtgcttatggtggtatgtgcttgttaggggtaggaaggggcggttgtgtgt 36281127  T
Q  107 tgagaggggggatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttgg 206  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36281126 tgagaggggcgatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataaaattagttgg 36281027  T
Q  207 aagatgtgtgatgggaattctactttgtttttgttagattcctgattggatgatatgtccctgagat--acttatagaagattatacgagttagctgata 304  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  36281026 aagatgtgtgatgggaattttactttgtttttgttagatccctgattggatgatatgcccctgagatacacttatagaagattatacgagttagctgata 36280927  T
Q  305 taaattgacaaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 404  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  36280926 taaattgacaaatgtagagaatgtgttcattatggggtggggagtgaacggtgaggagtggaagtggcgtaggaggttatttgcttgggaggaagagttg 36280827  T
Q  405 gtgagagagactgtgttgggcggttaattccaatggttttacaggttggatcagttgat 463  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  36280826 gtgagagagagtgtgttgggcggctaactccaatggttttacaggttggatcagttgat 36280768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 104 - 404
Target Start/End: Complemental strand, 7130227 - 7129924
Alignment:
Q  104 tgttgagaggggggatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagt 203  Q
    |||||||||||| ||||||| ||||||| |||||||||||| |||||| ||| ||||||||||||||||||||| || |||| |||||||||| ||||||    
T  7130227 tgttgagaggggtgatgggtcggtgtggcggcagactatgaaaagtataagaaagggcgtgggtcaggtggatgttgggtggttgagagataacattagt 7130128  T
Q  204 tggaagatgtgtgatgggaattctactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctg 301  Q
      |||  || |||||| || ||||||| |||||| ||||||| |||| |||| || ||||  |||||  || | || | |||||||||| |||||||| |    
T  7130127 cagaacgtgggtgatgcgacttctactatgttttggttagatccctggttgggtggtatgctcctgaaggagagttttggaagattatatgagttagcgg 7130028  T
Q  302 at-ataaattgacaaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaa 400  Q
    || | |||||| ||| ||||||| || |||| ||||| |||||||| | ||| ||||||  ||| |||||| |||||||||| ||| ||||||||||| |    
T  7130027 ataaaaaattggcaattgtagagcatatgtttattatagggtggggagagaatggtgaggcgtgtaagtggtgtaggaggttgttttcttgggaggaaga 7129928  T
Q  401 gttg 404  Q
    ||||    
T  7129927 gttg 7129924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 409
Target Start/End: Original strand, 6820618 - 6820907
Alignment:
Q  117 gatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtg 216  Q
    ||||||| |||||| ||||| | |||||||||||||  |||||| |||||||||| || ||||       |||||||||| ||||||| |||  || |||    
T  6820618 gatgggttggtgtgatggcatattatgagaagtatctaagagggtgtgggtcaggcgggtggt-------tgagagataacattagttagaacgtgggtg 6820710  T
Q  217 atgggaattctactttgtttttgttagattcctgatt-ggatgatatgtccctgag--atacttatagaagattatacgagttagctgata-taaattga 312  Q
    ||||||| |||||| |||||| ||||||| | || || ||||| | || || ||||  ||| ||||||||||||||| ||||||||||| | |||||||     
T  6820711 atgggaactctactctgttttggttagatccttggtttggatggtttgcccttgagggatagttatagaagattatatgagttagctgacaataaattgg 6820810  T
Q  313 caaatgtagagaatgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgag 409  Q
    ||| |||||||||| |||||| ||   | ||||| |||||||||||| ||||||||| ||||| |||||||||||||||| ||||| ||||||||||    
T  6820811 caactgtagagaatatgttcactacatgatggggagtgaacggtgaggagtggaagtagcgtatgaggttatttgcttggaaggaagagttggtgag 6820907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Original strand, 48352158 - 48352193
Alignment:
Q  362 gtggaagtggcgtaggaggttatttgcttgggagga 397  Q
    |||||||||||| |||||||||||||||||||||||    
T  48352158 gtggaagtggcggaggaggttatttgcttgggagga 48352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 26955856 - 26955807
Alignment:
Q  349 tgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaa 398  Q
    |||| ||||||| ||| |||||||||| |||||| |||||||||||||||    
T  26955856 tgaatggtgagacgtgaaagtggcgtaagaggttgtttgcttgggaggaa 26955807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 1072450 - 1072606
Alignment:
Q  102 tgtgttgagaggggggatgggtaggtgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatatta 201  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||| || || || |||||||| | ||| ||||||||||||||||    
T  1072450 tgtgttgagaggggtgatgggtcggtatggtggcagactatgagaaatattagagagggagtaggacacgtggatggagggtgactgagagataatatta 1072549  T
Q  202 gttggaagatgtgtgatgggaattctactttgtttttgttagattcctgattggatg 258  Q
    || ||||| || || ||| ||||| ||||||||||| |||||||  ||| |||||||    
T  1072550 gtcggaaggtgggtaatgagaattttactttgttttggttagatctctggttggatg 1072606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 1072686 - 1072755
Alignment:
Q  335 tatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttg 404  Q
    |||||||||||| ||||| ||||||  ||| ||||| |||||||||||| | | |||||||||| |||||    
T  1072686 tatggggtggggtgtgaatggtgaggcgtgcaagtgtcgtaggaggttactcgtttgggaggaagagttg 1072755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 463
Target Start/End: Complemental strand, 33178381 - 33178045
Alignment:
Q  127 tgtggtggcagactatgagaagtatcagagagggcgtgggtcaggtggatggtgagtggctgagagataatattagttggaagatgtgtgatgggaattc 226  Q
    |||||||||||| ||| |||| ||| |||||||  ||||| || |||||||| | |||| | || |||||||||||  ||||| || | ||||| || ||    
T  33178381 tgtggtggcagagtataagaaatattagagaggaggtgggacaagtggatggagggtggttaagggataatattagccggaaggtgggggatggaaactc 33178282  T
Q  227 tactttgtttttgttagattcctgattggatgatatgtccctga--gatacttatagaagattatacgagttagctgatataaattgacaaatgtagaga 324  Q
    |||| |||||| | ||||| | || ||||||| |||| | ||||  |||  || |  |||||| ||||||||| |||  |||| ||||||| ||| | |     
T  33178281 tactctgttttgggtagatccgtggttggatggtatgcctctgaaggattgttttcaaagattttacgagttaactgcaataagttgacaactgtggtgg 33178182  T
Q  325 atgtgttcattatggggtggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttggg 424  Q
    || ||||   ||||||||||||| |||| || |||  |||||||||||||  |||||| || |||||||||||| |||||||||| |||  ||||| |||    
T  33178181 atatgttttctatggggtgggggctgaatggagaggcgtggaagtggcgtcagaggttgttcgcttgggaggaagagttggtgagggag--tgtgtaggg 33178084  T
Q  425 cggttaattccaatggttttacaggttggatcagttgat 463  Q
    ||  ||| |||| | ||||||||||||||||||| ||||    
T  33178083 cgtctaactccagttgttttacaggttggatcaggtgat 33178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 15038804 - 15038747
Alignment:
Q  342 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaa 399  Q
    ||||| ||||||||||||  |||||||||| |||||| ||| ||||||||||||||||    
T  15038804 tggggagtgaacggtgagccgtggaagtggtgtaggacgttgtttgcttgggaggaaa 15038747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 463
Target Start/End: Complemental strand, 16305411 - 16305297
Alignment:
Q  347 ggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtgagagagactgtgttgggcggttaattccaatggttttac 446  Q
    |||||| ||||||  |||||||| | ||||||||||||| |||||||||||| ||||| |||| |||  |||||| ||| | ||| |  | ||||||| |    
T  16305411 ggtgaatggtgaggtgtggaagttgtgtaggaggttattcgcttgggaggaagagttgctgagggag--tgtgttaggcagctaacttgagtggttttgc 16305314  T
Q  447 aggttggatcagttgat 463  Q
    |||||||| ||||||||    
T  16305313 aggttggaacagttgat 16305297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 48710397 - 48710362
Alignment:
Q  362 gtggaagtggcgtaggaggttatttgcttgggagga 397  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48710397 gtggaagtggcgtaggaggttatttgcgtgggagga 48710362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 398
Target Start/End: Complemental strand, 13217011 - 13216975
Alignment:
Q  362 gtggaagtggcgtaggaggttatttgcttgggaggaa 398  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13217011 gtggaagtggagtaggaggttattagcttgggaggaa 13216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 27515915 - 27515880
Alignment:
Q  362 gtggaagtggcgtaggaggttatttgcttgggagga 397  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27515915 gtggaagtggcgtaggaggttatttgcgtgggagga 27515880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 42918027 - 42918063
Alignment:
Q  362 gtggaagtggcgtaggaggttatttgcttgggaggaa 398  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  42918027 gtggaaatggcggaggaggttatttgcttgggaggaa 42918063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 2845488 - 2845423
Alignment:
Q  342 tggggggtgaacggtgagaagtggaagtggcgtaggaggttatttgcttgggaggaaaagttggtg 407  Q
    ||||| ||||||||||||| | |||||||||| ||||| || |||||||| || || |||||||||    
T  2845488 tggggagtgaacggtgagacgaggaagtggcgaaggagattgtttgcttgagatgagaagttggtg 2845423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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