View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_18 (Length: 475)
Name: NF17668_low_18
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 36 - 446
Target Start/End: Original strand, 43069243 - 43069647
Alignment:
| Q |
36 |
cttcaagaggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacnnnnnnncttttgaaattcaatcttgta |
135 |
Q |
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| T |
43069243 |
cttcaagaggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacaaaaaaacttttgaaattcaatcttgta |
43069342 |
T |
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| Q |
136 |
agagctttttgtttcatttcatgcacaaaa-tattgaggaaaattttgaatcgctcatattttttgatgaaatgaaatcttcttaattattatattactt |
234 |
Q |
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| T |
43069343 |
agagctttttgtttcatttcatgcacaaaaatattgaggaaaattttgaatcgctcatattttttgatgaaatgaaatcttcttaattattatattactt |
43069442 |
T |
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| Q |
235 |
attctacacgtagatgattgatcacgatgagtgtctcctcactcttatgttttccacatggtgataggatttctagtgtaactgtttggataaaggtgga |
334 |
Q |
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| T |
43069443 |
attctacacgtagatgattgatc---atgagtgtctcctcactcttatgttttccatatggtgatagggtttccagtgtaactgtttggataaaggtgga |
43069539 |
T |
|
| Q |
335 |
aatgttagtagta----gtttgttaggtagaaggaaaaggaagtagcacactggttgaatcctgcatgcacctccggcatatataaaactcgttcgtaag |
430 |
Q |
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| T |
43069540 |
aatgttagtagtagtttgtttgttaggtagaaggaaaaggaagtagcacactggttgaatcc----tgcacctccggc----ataaaactcgttcgtaag |
43069631 |
T |
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| Q |
431 |
ctagtttatgccatca |
446 |
Q |
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| T |
43069632 |
ctagtttatgccatca |
43069647 |
T |
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