View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17668_low_19 (Length: 472)
Name: NF17668_low_19
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Original strand, 37272283 - 37272706
Alignment:
| Q |
30 |
aagctttggcaagacatgaaagctaaacatattaaaaatataacaaaacagataagattagaggaacaaagttgtggtaaagaaattttcttttgattga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37272283 |
aagctttggcaagacatgaaagctaaacatattaaaaatataacaaaacggataagattagaggaacaaagttgtggtaaagaaattttcttttgattga |
37272382 |
T |
|
| Q |
130 |
gtcacaaatacaattacgtggtcaactatattgatttaagaaatgtagagctttattcataaaataagctaagat--aaaaaattaagatatacttataa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37272383 |
gtcacaaatacaattacgtggtcaactatattgatttaagaaatgtagagctttattcataaaataagctaagataaaaaaaattaagatatacttataa |
37272482 |
T |
|
| Q |
228 |
tccagcataactaaaaattaagataatctggat--------tttcagtaagaattaggttcaaaattaaagcagttnnnnnnnttgggattgaaatagaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37272483 |
tccagcataactaaaaattaagataatctggattagttttctttgagtaagaattaggttcaaaattaaagcagtt-aaaaaattgggattgaaatagaa |
37272581 |
T |
|
| Q |
320 |
cctaacaaagcggtttcagaaggtgaagagaaggaagaaagagggaaattgagaaggtgaaacttaccgtggacgcgagagagagggtgtggagagattg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37272582 |
cctaacaaagcggtttcagaaggtgaagagaaggaagaaagtgggaaattgagaaggtgaaacttaccgtggacgcgagagagagggtgtggagagattg |
37272681 |
T |
|
| Q |
420 |
agagaagaagccattgagtttgggg |
444 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37272682 |
agagaagaagccattgagtttgggg |
37272706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University