View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_20 (Length: 472)
Name: NF17668_low_20
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 455
Target Start/End: Original strand, 46864549 - 46864983
Alignment:
| Q |
20 |
ttgaacatcatatacgtgtgatagacatatatttctaacacctttaaatttaaatgaagatccattatcaatccacttgtatggttgatcaaaatctaac |
119 |
Q |
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| T |
46864549 |
ttgaacatcatatacatgtgat-gacatatatttctaacacctttaaatttaaatgaagatccgttatcaatctacttgtatggttgatcaaaatctaac |
46864647 |
T |
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| Q |
120 |
acaattattatcatacttcttatgactcaacaaatatgaatagtataacaatgtaataaaaaagaggtgctcaaattctcaatatacggtccaaagtact |
219 |
Q |
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| T |
46864648 |
acaattattctcatacttcttatgactcaacaaatattaatagtataacaatgtaataaaaaaaaggtgctcaaattctcaatatacggtccaaattact |
46864747 |
T |
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| Q |
220 |
tcaagacttatttagtaatagagaacatgcaatgctgatgtttacaatgaagataaatcaaccaaaatatgtggataacatttcagtgacattgaggtgc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
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| T |
46864748 |
tcaagacttatttagtaatagagaacatgcaatgctgatgtttacaatgaagataaatcaaccaaaatatgtgggtaatattttggtgacattgaggtgc |
46864847 |
T |
|
| Q |
320 |
taatatcatgtgtcattgatcaactataacatcacaagtgtnnnnnnnnnnnnnnnntcatgattttcttctctctcattcataaagatgcacacttgtg |
419 |
Q |
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||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46864848 |
caatatcatgtgacattaatcaactataacatcacaagtgtgaaaaatgacaaaaaatcatgactttcttctctctcattcataaagatgcacacttgtg |
46864947 |
T |
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| Q |
420 |
atattgtggtcggctaatgtcattagcactctaatg |
455 |
Q |
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| T |
46864948 |
acattatgatcggctaatgtcattagcactccaatg |
46864983 |
T |
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