View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_21 (Length: 469)
Name: NF17668_low_21
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 2143938 - 2143486
Alignment:
| Q |
1 |
cttgttttttccccaaagtctgtctctcctcgcctctcctaaagtctcaaacatagctttagagatgaatcatggaggccatggtaaatagttcgagctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2143938 |
cttgttttttccccaaagtctgtctctcctcgcctctcctaaagtctcaaacatagctttagagatgaatcatggaggccatggtaaatagttcgagctc |
2143839 |
T |
|
| Q |
101 |
tcaaaagaaaaagctatggaatatggactcattattttgcactaaagggaattactttattaacatataaccaatttttgtttaatttattcatatacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2143838 |
tcaaaagaaaaagctatggaatatggactcattattttgcactaaagggaattactttattaacatataaccaatttttgtttaatttattcatatacaa |
2143739 |
T |
|
| Q |
201 |
agaaatatagttgctcataagttagcaagaatagtgactaaattagctagctcccatatcttacaatttttgccataatttatttctgttaaacaaaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2143738 |
ggaaatatagttgctcataagttagcaagaatagtgactaaattagctagctcccatatcttacaatttttgccataatttatttctgttaaacaaaaat |
2143639 |
T |
|
| Q |
301 |
accaaggttaattttttctgttagctttattttacaaaccttacactttaagtccaaatatagagtatgcttgttgaatattatcttcaaatatagatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2143638 |
accaaggttaattttttctgttagctttattttacaaaccttacactttaagtccaaatatagagtatgcttgttgaatattatcttcaaatatagatat |
2143539 |
T |
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| Q |
401 |
agtttgaaaaccactccatattttgtaaagtatatcaaggaataccacatttg |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2143538 |
agtttgaaaaccactccatattttgtaaagtatatcaaggaataccacatttg |
2143486 |
T |
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