View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_24 (Length: 447)
Name: NF17668_low_24
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_24 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 39793 - 40091
Alignment:
| Q |
30 |
ttggactttataataaacatgtacactccttaaaattttagtgtagaagaaagcttgaggacattttcttgatggagttagctaagagaaagaatgaaaa |
129 |
Q |
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| T |
39793 |
ttggactttataataaacatgtacactccttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaa |
39892 |
T |
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| Q |
130 |
taaggtggaa---acatttgatctaatggatgggttgatgcataatgaagatggtga---tgacaaattgagtgacaaagaagttgtagacaacattgtc |
223 |
Q |
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| T |
39893 |
taaggtgaaaagtacaagtgatctaatggatgggttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtc |
39992 |
T |
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| Q |
224 |
tctctattggttggtggatatacttctacttcccttgtatccatgtgggctatttaccttctagccaagtatccacttgtgttaaaaaagttgagggta |
322 |
Q |
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| T |
39993 |
tctctagtgattggtggatatatgtctacttccctttcatccatgtgggctatttaccttcttgctaagtatccaattgttctaaaaaagcttagggta |
40091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 58 - 324
Target Start/End: Original strand, 25227 - 25496
Alignment:
| Q |
58 |
cttaaaattttagtgtagaagaaagcttgaggacattttcttgatggagttagctaagagaaagaatgaaaataaggtggaaacatttgatctaatggat |
157 |
Q |
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| T |
25227 |
cttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggat |
25326 |
T |
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| Q |
158 |
gggttgatgcataatgaagatggtga---tgacaaattgagtgacaaagaagttgtagacaacattgtctctctattggttggtggatatacttctactt |
254 |
Q |
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| T |
25327 |
gggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtagacaacattgtctctctagtagctgctggatatatatcaactt |
25426 |
T |
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| Q |
255 |
cccttgtatccatgtgggctatttaccttctagccaagtatccacttgtgttaaaaaagttgagggtaat |
324 |
Q |
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| T |
25427 |
cccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaaaaaagcttagggtaat |
25496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 61 - 322
Target Start/End: Original strand, 32440 - 32704
Alignment:
| Q |
61 |
aaaattttagtgtagaagaaagcttgaggacattttcttgatggagttagctaagagaaagaatgaaaataaggtggaaacatttgatctaatggatggg |
160 |
Q |
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| T |
32440 |
aaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatggatggg |
32539 |
T |
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| Q |
161 |
ttgatgcataatgaagatggtga---tgacaaattgagtgacaaagaagttgtagacaacattgtctctctattggttggtggatatacttctacttccc |
257 |
Q |
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| T |
32540 |
ttgatgcaaattgaagatggtgaaggtgataaattgagtgacaaagaagttgtagacaacattgtctctctagtggctgctggatatatccctacttccc |
32639 |
T |
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| Q |
258 |
ttgtatccatgtgggctatttaccttctagccaagtatccacttgtgttaaaaaagttgagggta |
322 |
Q |
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| T |
32640 |
ttgcatcaacttgggctatttaccttcttgctaagtatccaattgtgctaacaaaattgagggta |
32704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 59 - 312
Target Start/End: Complemental strand, 4996 - 4740
Alignment:
| Q |
59 |
ttaaaattttagtgtagaagaaagcttgaggacattttcttgatggagttagctaagagaaagaatgaaaataaggtggaaacatttgatctaatggatg |
158 |
Q |
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| T |
4996 |
ttaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaaacaattgatctaatggatg |
4897 |
T |
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| Q |
159 |
ggttgatgcataatgaagatggtga---tgacaaattgagtgacaaagaagttgtagacaacattgtctctctattggttggtggatatacttctacttc |
255 |
Q |
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| T |
4896 |
ggttgatgcaaattgaagatgatgatggtgacaaattgagtgacaaagaagttgtagacaacattgtctctctagtagctgctggatatctatcaacttc |
4797 |
T |
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| Q |
256 |
ccttgtatccatgtgggctatttaccttctagccaagtatccacttgtgttaaaaaa |
312 |
Q |
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| T |
4796 |
ccttgcatctacttgggctatataccttcttgctaagtatccaattgtgctaaaaaa |
4740 |
T |
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