View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_26 (Length: 439)
Name: NF17668_low_26
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_26 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 41101932 - 41101494
Alignment:
| Q |
1 |
agcaagctattgatgctctcttttccacagaggctgaatacaaggccattgcaaccctcacatctgagttattcaagcattgtattttgtgatagtcaaa |
100 |
Q |
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| T |
41101932 |
agcaagctactgatgctctcttttccacagaggctgaatacaaggccattgcaaccctcacatctgagttattcaagcattgtattttgtgatagtcaaa |
41101833 |
T |
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| Q |
101 |
gtggcatccaacttgccaagaacgttccaaacatatcaacctcaattgcgattatatcctggaatatgtttgttcttgtttcctcatacttgttcacaat |
200 |
Q |
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| T |
41101832 |
gtggcatccaacttgccaagaacgttccaaacatatcaacttcaattgtgattttatcctggaatatgtttgttcttgtttcctcaaacttgttcacaat |
41101733 |
T |
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| Q |
201 |
catatcatatcagctccaaacatcaactagcttacccattgaaaaaagcactactaaaatcccttttcaacatctcatttccaagttggagatattgaac |
300 |
Q |
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| T |
41101732 |
catatcatatcagctccaaacatcaactagcttacccattgaaaaaagcactaccaaaatcccttttcagcatctcatttccaagttggagatattgaac |
41101633 |
T |
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| Q |
301 |
attataccttccaacttgagaggaggatattgaatataacaaatttcttgcatttatgttattactgttttatagttggtttaatttaggttcaccttgt |
400 |
Q |
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| T |
41101632 |
attataccttccaacttgagaggaggatattgaatataacaaatttcttgcatttatgttattactgttttatagttggtttaatttaggttcaccttgt |
41101533 |
T |
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| Q |
401 |
tgcatgagatatacttcaatacgaagaaaactcgatttc |
439 |
Q |
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| T |
41101532 |
tgcatgagatatacttcaatacgaagaaaactcgatttc |
41101494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 72 - 438
Target Start/End: Complemental strand, 41091775 - 41091393
Alignment:
| Q |
72 |
ttcaagcattgtattttgtgatagtcaaagtggcatccaacttgc----------------caagaacgttccaaacatatcaacctcaattgcgattat |
155 |
Q |
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| T |
41091775 |
ttcaagcattgtattttgtgatagtcaaagtggcatccaacttgcaactaagcccatttgccaagaacgttacaaacatatcgacttcgattgtgatttt |
41091676 |
T |
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| Q |
156 |
atcctggaatatgtttgttcttgtttcctcatacttgttcacaatcatatcatatcagctccaaacatcaactagcttacccattgaaaaaagcactac- |
254 |
Q |
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| T |
41091675 |
atccgggaatatgtttgttctagtttcctcaaacttgttcacaatcatatcataacaactccaaacatcaactagctgacccattgaaaaaagcactacc |
41091576 |
T |
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| Q |
255 |
taaaatcccttttcaacatctcatttccaagttggagatattgaacattataccttccaacttgagaggaggatattgaatataacaaatttcttgcatt |
354 |
Q |
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| T |
41091575 |
taaaatccctattctgcatctcatttccaagttggggatttcaaacat-atatcttccaacttgagagggggatattgaatataacaaatttgttgcatt |
41091477 |
T |
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| Q |
355 |
tatgttattactgttttatagttggtttaatttaggttcaccttgttgcatgagatatacttcaatacgaagaaaactcgattt |
438 |
Q |
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| T |
41091476 |
tatgttatcactgttttatagttagtttaattgaggttctccttgttacatgagatatacttcaatacgaagaaaactctattt |
41091393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 111 - 374
Target Start/End: Complemental strand, 41080365 - 41080108
Alignment:
| Q |
111 |
acttgccaagaacgttccaaacatatcaacctcaattgcgattatatcctggaatatgtttgttcttgtttcctcatacttgttcacaatcatatcatat |
210 |
Q |
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| T |
41080365 |
acttgccaagaatgttccaaacatatcgacattgattgtcattttatccaaaaatatgtttgttctagtttcctcaaatttgttcgcaatca---cata- |
41080270 |
T |
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| Q |
211 |
cagctccaaacatcaactagcttacccattgaaaaaagcactac-taaaatcccttttcaacatctcatttccaagttggagatattgaacattatacct |
309 |
Q |
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| T |
41080269 |
-agctccagacatgaactagctgacccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaaca-tatatct |
41080172 |
T |
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| Q |
310 |
tccaacttgagaggaggatattgaatataacaaatttcttgcatttatgttattactgttttata |
374 |
Q |
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| T |
41080171 |
tccaacttaagagg-ggatatttaatataacatatttgttgcatttatgttctaactgttttata |
41080108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 41080421 - 41080376
Alignment:
| Q |
71 |
attcaagcattgtattttgtgatagtcaaagtggcatccaacttgc |
116 |
Q |
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| T |
41080421 |
attcaagcattgtattttgtgatagtcaaagtggcacccaacttgc |
41080376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41080535 - 41080463
Alignment:
| Q |
1 |
agcaagctattgatgctctcttttccacagaggctgaatacaaggccattgcaaccctcacatctgagttatt |
73 |
Q |
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| T |
41080535 |
agcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttatt |
41080463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 41091879 - 41091815
Alignment:
| Q |
7 |
ctattgatgctctcttttccacagaggctgaatacaaggccattgcaaccctcacatctgagtta |
71 |
Q |
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| T |
41091879 |
ctattgttgctcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagtta |
41091815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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