View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17668_low_27 (Length: 431)
Name: NF17668_low_27
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 36424939 - 36424543
Alignment:
| Q |
17 |
caaaggctgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36424939 |
caaaggccgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
36424840 |
T |
|
| Q |
117 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36424839 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtgtgtggtgga |
36424740 |
T |
|
| Q |
217 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttgctttcaatgctacgaaaaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
36424739 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttgctttcaatgccacgaaaaatg |
36424640 |
T |
|
| Q |
317 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaag |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36424639 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagtaag |
36424543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 36421415 - 36421022
Alignment:
| Q |
17 |
caaaggctgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
36421415 |
caaaggccgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccaggttgtagtgt |
36421316 |
T |
|
| Q |
117 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
216 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36421315 |
ctgagtgaatagcttattggttgtgtcaacaaaaccaacattaagggaacctttaacgaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
36421216 |
T |
|
| Q |
217 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttgctttcaatgctacgaaaaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
36421215 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttgcttgctttcaatgccacgaaaaatg |
36421116 |
T |
|
| Q |
317 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36421115 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagt |
36421022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 36427912 - 36427519
Alignment:
| Q |
17 |
caaaggctgaaaaagctaaagcagattttgtagtattagaattgaattgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgaagtgt |
116 |
Q |
| |
|
||||||| |||||||| ||||||| ||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36427912 |
caaaggcagaaaaagccaaagcaggttttgaagtatcagcattgaactgaaaatgaacaagtccctttggaaacacaaacatgtcaccgggttgtagtgt |
36427813 |
T |
|
| Q |
117 |
ttgagtgtatagcttgttggttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtgga |
216 |
Q |
| |
|
||||||| ||||||| || || ||||| || ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36427812 |
ttgagtgaatagcttattagtggtgtccacaaaaccaacattcagggaacctttcgcgaggaagagtagctcggctgaacgagggtgtgtgtgtggtgga |
36427713 |
T |
|
| Q |
217 |
ttgatggttccaggtgggtacattagagcagcatatgatacactttgtccatcaagagctggaaattcttttttacttgctttcaatgctacgaaaaatg |
316 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |||| || |
|
|
| T |
36427712 |
ttgatggttccaggtgggtatattagagcagcatatgcgacactttgtccgtcaagagctggaaattctgctttgcttgctttcaaggctttgaaagttg |
36427613 |
T |
|
| Q |
317 |
agggttgtatgtttggtacagtaagggcgcggaaaccggtgtatgtgaagaagttgccatcaacttgggttccatttggggctatgaagtcagt |
410 |
Q |
| |
|
|||| |||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
36427612 |
agggctgtatgtttggtggaagaagtgcgcggaaaccggtgaatgtgaagaagttgccatcaacttgggttccagttggggctatgaaatcagt |
36427519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 19148475 - 19148343
Alignment:
| Q |
136 |
gttgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtggattgatggttccaggtgggt |
235 |
Q |
| |
|
||||||||||| || ||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| ||| | |||| || |
|
|
| T |
19148475 |
gttgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttgga |
19148376 |
T |
|
| Q |
236 |
acattagagcagcatatgatacactttgtccat |
268 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |
|
|
| T |
19148375 |
attgaagagcagcatatgacacactttgtccat |
19148343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 268
Target Start/End: Original strand, 19144520 - 19144650
Alignment:
| Q |
138 |
tgtgtcaacgaaaccaacattaagggaacctttaacaaggaagagtagctcggctgaacgagggtgtgtatgtggtggattgatggttccaggtgggtac |
237 |
Q |
| |
|
||||||||| || ||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| ||| | |||| || | |
|
|
| T |
19144520 |
tgtgtcaacaaacccaacttgaagtgaaccttgaacaacaaagagtagttcagctgaacgtgggtgtgtgtgtggtggatttatgctgttaggttggaat |
19144619 |
T |
|
| Q |
238 |
attagagcagcatatgatacactttgtccat |
268 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
19144620 |
tgaagagcagcatatgacacactttgtccat |
19144650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University