View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_30 (Length: 415)
Name: NF17668_low_30
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 4065727 - 4066103
Alignment:
| Q |
17 |
aatatcaatagtccttattgatggagttgcgctcttgtgcagtaaggaacacagaagtcttctttcctaccttaggtggcaaggattatgggtcactaga |
116 |
Q |
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| T |
4065727 |
aatatcaatagtcctgattgatggagttgcgctcttgtgcggtaaggaacacagaagtcttctttcccaccttaggtggcaaggattatgggtcactaga |
4065826 |
T |
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| Q |
117 |
ccgccagtccaaaacactttgtcttagtgagtttattcacatagaacaagatccttgtaaaaatgacactcaacattcataagaatccataatacaaata |
216 |
Q |
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| T |
4065827 |
ccgccagtccaaaacactttgtcttagtgagtttattcacatagaacaagatccttgtaaaaatgacactcaacattcataagaatccataatacaaata |
4065926 |
T |
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| Q |
217 |
tggtgagatttatatgattttaaaccaaaaaagagaatatgttaaaaagtctgttaaaaagtgagttgctagtgttattcttaatgctattctcattcaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4065927 |
tggtgagatttatatgattttaaaccaaaaaagagaata------------tgttaaaaagtgagttgctagtgttgttcttaatgctattctcattcaa |
4066014 |
T |
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| Q |
317 |
aattgaaccttaaacaccaatttatgcgtattactttaataatttaatattcaaaacataacaagaaaagttctgtgtaataatctctg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4066015 |
aattgaaccttaaacaccaatttatgcgtattactttaataatttaatattcaaaacataacaagaaaagttctgtgtaataatctctg |
4066103 |
T |
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