View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_31 (Length: 408)
Name: NF17668_low_31
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 41 - 392
Target Start/End: Original strand, 7744763 - 7745114
Alignment:
| Q |
41 |
aacgggaaaaattataatttttgaaaattgcaaggagtggttctctaatagtaggtgggaatattctaaaccaggctttattttaaaccttaactagcca |
140 |
Q |
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| T |
7744763 |
aacggaaaaaattctaatttctgaaaattgcaaggagtggttctctgatagtaagtgggaaaattctaaaccaagctttattttaaaccttaactagcca |
7744862 |
T |
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| Q |
141 |
caatatggatatcattgcagaatctggcaaagacattgagtccaaaatcaacaaggaatgcctgaaaagtgcgagtctcatgatcaagatgtcatccatt |
240 |
Q |
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| T |
7744863 |
cgatatggatatcattgcagcatctggcaaagacattgagtccaaaatcaacaaggaatgtctgaaaagtgcgagtctcatgatcaagatgtcatccatt |
7744962 |
T |
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| Q |
241 |
gaagctgactatcactttgctcttgccatgaaagcctctttagctgaatattgggccaacattcaagcttgtttcctttcaaaagtttatataatttaac |
340 |
Q |
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| T |
7744963 |
gaagttgactatcactttgctcttgccatgaaagcctctttagctgaatattgggccaacattcaagcttgtttcctttcaaaaatttatataatttaac |
7745062 |
T |
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| Q |
341 |
cgtttagattttatcagaacaatctgtactttcattacactataggttttgt |
392 |
Q |
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| T |
7745063 |
cgtttagattttatcagaacaatctgtactttcattacactataggttttgt |
7745114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 202 - 392
Target Start/End: Complemental strand, 12543159 - 12542969
Alignment:
| Q |
202 |
ctgaaaagtgcgagtctcatgatcaagatgtcatccattgaagctgactatcactttgctcttgccatgaaagcctctttagctgaatattgggccaaca |
301 |
Q |
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| T |
12543159 |
ctgaaaattgcgagtctcatgatcaagatgtcatccattgaagctgtctatcactttgctcttgccatgaaagcctctttagctgaatattgggccaaca |
12543060 |
T |
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| Q |
302 |
ttcaagcttgtttcctttcaaaagtttatataatttaaccgtttagattttatcagaacaatctgtactttcattacactataggttttgt |
392 |
Q |
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| T |
12543059 |
ttcaagcttgtttcctttcaaaaaattatataatttaaccatttagaatttatcagaacaatctgtactttcattacactaaaggttttgt |
12542969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 145 - 389
Target Start/End: Original strand, 27574938 - 27575191
Alignment:
| Q |
145 |
atggatatcattgcagaatctggcaaagacattgagtccaaaatcaacaaggaatgcctgaaaagtgcgagtctcatgatcaagatgtcatccattgaag |
244 |
Q |
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| T |
27574938 |
atggatatcaatgcagcatctggcaaagacattgagtccaaaatcaatgaggaatgtccgaaaggtgcgagtctcatgaccaagatgtcatccgttgaac |
27575037 |
T |
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| Q |
245 |
ctgactatcactttgctcttgccatgaaagcctctttagctgaatattgggccaacattcaagcttgtttcctttcaaaagtttatataatttaaccgt- |
343 |
Q |
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| T |
27575038 |
ctgtctatcactttgctcttgccaagaaagcctctttagctgaagattgggccaacattcaagcttgtttcctttcaaaa-tctatataatttaaccctt |
27575136 |
T |
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| Q |
344 |
---------ttagattttatcagaacaatctgtactttcattacactataggttt |
389 |
Q |
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| T |
27575137 |
taaattaacttagattttatcagaacaatttgtactttcattacactgtaggttt |
27575191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 42862225 - 42862332
Alignment:
| Q |
217 |
ctcatgatcaagatgtcatccattgaagctgactatcactttgctcttgccatgaaagcctctttagctgaatattgggccaacattcaagcttgtttcc |
316 |
Q |
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||||||| ||||||||| ||||||||| |||| ||||| | |||||| | |||||||||| |||||||| |||||||| | |||||||||||||| |
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| T |
42862225 |
ctcatgaccaagatgtcgtccattgaaactgaatatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgttcaagcttgtttct |
42862324 |
T |
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| Q |
317 |
tttcaaaa |
324 |
Q |
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| T |
42862325 |
ttccaaaa |
42862332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 24917719 - 24917802
Alignment:
| Q |
48 |
aaaattataatttttgaaaattgcaaggagtggttctctaatagtaggtgggaatattctaaaccaggctttattttaaacctt |
131 |
Q |
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| T |
24917719 |
aaaattctaatctctgaaaattgcaaggagtggttctttgatagtaagtgggaaaattctaaaccaagctttattttaaacctt |
24917802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 1081145 - 1081228
Alignment:
| Q |
48 |
aaaattataatttttgaaaattgcaaggagtggttctctaatagtaggtgggaatattctaaaccaggctttattttaaacctt |
131 |
Q |
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| T |
1081145 |
aaaattctaatctctgaaaattgcaaggagtggttctttgatagtaagtgggaaaattctaaaccaaattttattttaaacctt |
1081228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 15339705 - 15339788
Alignment:
| Q |
48 |
aaaattataatttttgaaaattgcaaggagtggttctctaatagtaggtgggaatattctaaaccaggctttattttaaacctt |
131 |
Q |
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| T |
15339705 |
aaaattctaatctctgaaaattgcaaggagtggttctttgatagtaagtgggaaaattctaaaccaaactttattttaaacctt |
15339788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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