View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_32 (Length: 376)
Name: NF17668_low_32
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 97 - 342
Target Start/End: Original strand, 35314021 - 35314266
Alignment:
| Q |
97 |
atcatgcaagtataataaatagtattttgtttctgctttggtacttcatattgccttttgtccttaccactattagaaacattcttagagatactcttga |
196 |
Q |
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| T |
35314021 |
atcatgcaagtataataaatagtattttgtttctgctttggtacttcatattgctttttgtccttaccactattagaaacattctcagagatgctcttga |
35314120 |
T |
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| Q |
197 |
agatagacgtacagtactttatgcagacgttgagttcatatataaggaattaaaggaccacatttccacgtgcattcgtaaatcagagaccctctgatca |
296 |
Q |
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| T |
35314121 |
agatagacgtacaatactttatgcagatgttgagttcatatagaaggaattaaaggaccacatttccgcgtgcattcgtaaatcagagaccctctgatta |
35314220 |
T |
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| Q |
297 |
agattggacacttcagattaaaactcgatagtttaaattataaaat |
342 |
Q |
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| T |
35314221 |
agattggacactccagattaaaactcgatagtttaaattataaaat |
35314266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 342
Target Start/End: Original strand, 38696059 - 38696088
Alignment:
| Q |
313 |
attaaaactcgatagtttaaattataaaat |
342 |
Q |
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| T |
38696059 |
attaaaactcgatagtttaaattataaaat |
38696088 |
T |
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