View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17668_low_33 (Length: 366)

Name: NF17668_low_33
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17668_low_33
NF17668_low_33
[»] chr3 (3 HSPs)
chr3 (205-313)||(6508856-6508964)
chr3 (13-113)||(6507748-6507848)
chr3 (318-366)||(6509016-6509064)
[»] chr8 (2 HSPs)
chr8 (207-313)||(44969242-44969348)
chr8 (318-366)||(44969389-44969437)
[»] chr6 (2 HSPs)
chr6 (205-313)||(31573521-31573629)
chr6 (12-113)||(31571091-31571193)
[»] chr5 (2 HSPs)
chr5 (207-313)||(35331011-35331117)
chr5 (318-366)||(35331158-35331206)
[»] scaffold0566 (2 HSPs)
scaffold0566 (12-113)||(10242-10343)
scaffold0566 (230-313)||(9439-9522)
[»] chr7 (2 HSPs)
chr7 (205-299)||(1969140-1969234)
chr7 (12-113)||(1968039-1968140)
[»] chr4 (2 HSPs)
chr4 (12-113)||(50379036-50379137)
chr4 (205-298)||(50380123-50380216)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 6508856 - 6508964
Alignment:
Q  205 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||    
T  6508856 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacctttaaaaactacaaaagctagaacacaaaagtc 6508955  T
Q  305 tgttgcaaa 313  Q
    |||||||||    
T  6508956 tgttgcaaa 6508964  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 6507748 - 6507848
Alignment:
Q  13 aagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagagtaaaaacctgtaatagaaaatcaaaagg 112  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6507748 aagaatatgaaactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaaagagtaaaaacctgtaatagaaaatcaaaagg 6507847  T
Q  113 a 113  Q
    |    
T  6507848 a 6507848  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 6509016 - 6509064
Alignment:
Q  318 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6509016 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 6509064  T

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Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 44969242 - 44969348
Alignment:
Q  207 tggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtctg 306  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44969242 tggatcgagtaaaaattagtataaaattaatataatcaaaagaaatataattcagttttagtacccttaaaaactacaaaagccaaaacacaaaagtctg 44969341  T
Q  307 ttgcaaa 313  Q
    |||||||    
T  44969342 ttgcaaa 44969348  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 44969389 - 44969437
Alignment:
Q  318 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 366  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44969389 tttgacaaaatagatatcaccacacaccgagttaggttgtcgctttttt 44969437  T

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Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 31573521 - 31573629
Alignment:
Q  205 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||    
T  31573521 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataatttagttttagtacccttaaaaactacaaaaggcagaacacaaaagtc 31573620  T
Q  305 tgttgcaaa 313  Q
    | |||||||    
T  31573621 tattgcaaa 31573629  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 31571091 - 31571193
Alignment:
Q  12 gaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagagt-aaaaacctgtaatagaaaatcaaaa 110  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  31571091 gaagaatatgagactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaaagagtaaaaaacctgtaatagaaaattaaaa 31571190  T
Q  111 gga 113  Q
    |||    
T  31571191 gga 31571193  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 35331011 - 35331117
Alignment:
Q  207 tggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtctg 306  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  35331011 tggatcgagtaaaaattagtataaaattaatataatcaaaagaaatataattcagttttaatacccttaaaaactacaaaagccaaaacacaaaagtctg 35331110  T
Q  307 ttgcaaa 313  Q
    |||||||    
T  35331111 ttgcaaa 35331117  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 35331158 - 35331206
Alignment:
Q  318 tttgacaaaatagatatcaccacacaccgagttaggttgttgctttttt 366  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35331158 tttgacaaaatagatatcaccacacaccgagttaggttgtcgctttttt 35331206  T

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Target: scaffold0566 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 10343 - 10242
Alignment:
Q  12 gaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagagtaaaaacctgtaatagaaaatcaaaag 111  Q
    |||||||||||||||||||||| |||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10343 gaagaatatgaaactccatttagacgtggtgttgagaatattggtatgagatgatttctttttgatgaaagagtaaaaacctgtaatagaaaatcaaaag 10244  T
Q  112 ga 113  Q
    ||    
T  10243 ga 10242  T

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Target: scaffold0566; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 230 - 313
Target Start/End: Complemental strand, 9522 - 9439
Alignment:
Q  230 aaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaaaagtctgttgcaaa 313  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  9522 aaattagtatgaacaaaaaaaatataattcagttttagtacccttaaaaactacaaaagccaaaacacaaaagtttgttgcaaa 9439  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 1969140 - 1969234
Alignment:
Q  205 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacacaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||    
T  1969140 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagtttttgtaccctcaaaaactacaaaagtcaaaacacaa 1969234  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 1968039 - 1968140
Alignment:
Q  12 gaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagagtaaaaacctgtaatagaaaatcaaaag 111  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| | |||||||||||||||||    
T  1968039 gaagaatatgaaactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaatgagtaaaaacttataatagaaaatcaaaag 1968138  T
Q  112 ga 113  Q
    ||    
T  1968139 ga 1968140  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 50379036 - 50379137
Alignment:
Q  12 gaagaatatgaaactccatttaaacgtggtactgaggatattggtatgagatgatttcttttcgatgaaagagtaaaaacctgtaatagaaaatcaaaag 111  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||    
T  50379036 gaagaatatgaaactccatttagacgtggtgctgaggatattggtatgagatgatttctttttgatgaatgagtaaaaacttgtaatagacaatcaaaag 50379135  T
Q  112 ga 113  Q
    ||    
T  50379136 ga 50379137  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 50380123 - 50380216
Alignment:
Q  205 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagttttagtacccttaaaaactacaaaggccaaaacaca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| | |||||||||    
T  50380123 tgtggatcgagtaaaaattagtatgaaattaatatgaacaaaagaaatataattcagtttttttaccctcaaaaactacaaaagtcaaaacaca 50380216  T

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