View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_36 (Length: 346)
Name: NF17668_low_36
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 24991230 - 24990922
Alignment:
| Q |
1 |
tatcacctaaaaataatagaagaatataattatttgcacattaaaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcat |
100 |
Q |
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| T |
24991230 |
tatcgcctaaaaataatagaagaatataattatttgcacattaaaatgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcat |
24991131 |
T |
|
| Q |
101 |
gcattctgtggcaagattaggcaattgacttttgcctttgaaacctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatg |
200 |
Q |
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| T |
24991130 |
gcattctgtggcaagattaggcaattgacttttgcctttgaaacctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatg |
24991031 |
T |
|
| Q |
201 |
ggaagcaactttggtgatccatgaattcccaatagtacagtcaatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaattttt |
300 |
Q |
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| T |
24991030 |
ggaagcaactttggtgatccatgaattcccaatagtacagtcaatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaattttt |
24990931 |
T |
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| Q |
301 |
aactagtaa |
309 |
Q |
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||||||||| |
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| T |
24990930 |
aactagtaa |
24990922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 24994899 - 24994607
Alignment:
| Q |
1 |
tatcacctaaaaataatagaagaatataattatttgcacattaaaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcat |
100 |
Q |
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|||| ||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
24994899 |
tatcgcctaaaaataatagaagaatataattacttggacactaaaacgcatcgcataatttgagtttttgc---tagtgatgatcatt-acccctttcat |
24994804 |
T |
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| Q |
101 |
gcattctgtggcaagattaggcaattgacttttgcctttgaaacctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
24994803 |
gcattctgtggcaagattaggcaattgacttttgcctttgaaacctccaaagaccgatccttcgattttgcggccatcaaagagctccattgggtggaga |
24994704 |
T |
|
| Q |
201 |
ggaagcaactttggtgatccatgaattcccaatagtacagtcaatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaatttt |
299 |
Q |
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||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |||| |
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| T |
24994703 |
ggaagtaactttggtgatgcatgaattcccaatagtatagtcaatccccaaccctacattatac--aattagacataaaatttgatagtgcacagtttt |
24994607 |
T |
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