View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_39 (Length: 323)
Name: NF17668_low_39
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 22059497 - 22059805
Alignment:
| Q |
10 |
attataaagaaaatagaattaaaggattatggtatgtcaattatatttctcttgaaaatgaatat-----------aaaaacaaacttactaatttatat |
98 |
Q |
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| T |
22059497 |
attataaagaaaacagaatttaaggattatggtatgtcaattatatttttcttgaaaatgaatataaatgacatataaaaacaaacttactaatttatat |
22059596 |
T |
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| Q |
99 |
tttccagcagaaaatgatgtgagtttaacttcaaatggttcaggctccagtgcaacattccgataggtgtgataagctggtaattctaaggggtttagtt |
198 |
Q |
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| T |
22059597 |
tttccaacagaaaatgatgtgagtttaacttcaaatggttcaggctccagtgcaacattccgataggtatgataaggtggtaattctaaggggtttagtt |
22059696 |
T |
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| Q |
199 |
cggttggctgagctatatctataagaaaacgattgtttccatggtatgtcattaaaagtatcttgttgccatcaattcgcaaaaaatttcttaattcaga |
298 |
Q |
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| T |
22059697 |
cggttggttgagctatatctataagaaaacgattgtttccatggtatgtcattaaaagtatcttgttgccatcaatttgcaaaaaaattcttaattcaga |
22059796 |
T |
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| Q |
299 |
ccatccttc |
307 |
Q |
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| T |
22059797 |
ccatccttc |
22059805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 31771824 - 31771712
Alignment:
| Q |
195 |
agttcggttggctgagctatatctataagaaaacgattgtttccatggtatgtcattaaaagtatcttgttgccatcaattcgcaaaaaatttcttaatt |
294 |
Q |
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||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||| || |
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| T |
31771824 |
agttccgttggctgagctacatctataagaaaccgattgtttccatgatatgtcattaaaagcatcttgttgccatcaattcccaaaaaagatcttagtt |
31771725 |
T |
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| Q |
295 |
cagaccatccttc |
307 |
Q |
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| T |
31771724 |
cagcccatccttc |
31771712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 31771920 - 31771827
Alignment:
| Q |
75 |
aaaaacaaacttactaatttatattttccagcagaaaatgatgtgagtttaacttcaaatggttcaggctccagtgcaacattccgataggtgt |
168 |
Q |
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|||||||||||||||||||||||||| |||| |||| ||||| | | |||||| || ||| ||| |||||| |||||||||||||||||||| |
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| T |
31771920 |
aaaaacaaacttactaatttatatttcttagcaaaaaaggatgtcactgtaacttgaattgggtcaagctccattgcaacattccgataggtgt |
31771827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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