View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_41 (Length: 311)
Name: NF17668_low_41
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 8793059 - 8793358
Alignment:
| Q |
1 |
tactagtgttctttccaagaggtggatttcgctctatcattcgctcacttttataaaattcgatgacaaatccattgaagatcatgatcaattccttcac |
100 |
Q |
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| T |
8793059 |
tactagtgttctttccaagaggtggatttcgctctatcattcgctcacttttataaaattcgatgacaaatccattgaagatcatgaccaattccttcac |
8793158 |
T |
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| Q |
101 |
ttttgtcgctccgtggaagcagtcacactctcaccgcacgttcaacaaaaacccatcaaaatgttttaccttagatgtggtcgttatggaaattggcaca |
200 |
Q |
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| T |
8793159 |
ttttgtcgctccgtggaagcagtcacactctcaccgcacgttcaacaaaaacccatcaaaaagttttaccttagatgtggtcgttatggaaattggcaca |
8793258 |
T |
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| Q |
201 |
ttccacctattgatgtatggatcgaagcaataaatcagcgtggagtcgactatattcatctctctatgaatctccatccct---tgcccgtgggagatga |
297 |
Q |
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| T |
8793259 |
ttccacctattgatgtatggatcgaagcaataaatcagcgtggagtcgactatattcatctctctatgaacctccatcgcttgatgcccgtgggagatga |
8793358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 31270222 - 31270387
Alignment:
| Q |
1 |
tactagtgttctttccaagaggtggatttcgctctatcattcgctcacttttataaaattcgatgacaaatccattgaagatcatgatcaattccttcac |
100 |
Q |
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||||||||||||||| || || |||| ||| |||||||| |||| | || |||||||||| || || |||| || |||| | |||| | ||||||| | |
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| T |
31270222 |
tactagtgttctttcaaaaagatggacttcactctatcactcgcaccctattataaaatttgacgatgaatctgttaaagaccgtgatgacttccttcgc |
31270321 |
T |
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| Q |
101 |
ttttgtcgctccgtggaagcagtcacactctcaccgcacgttcaacaaaaacccatcaaaatgttt |
166 |
Q |
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||||||| ||| ||||| | || |||||||||||| |||| ||| | |||||||||||| |||| |
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| T |
31270322 |
ttttgtcactctgtggatgtggtgacactctcaccgaacgtgcaataccaacccatcaaaaagttt |
31270387 |
T |
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