View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17668_low_43 (Length: 304)
Name: NF17668_low_43
Description: NF17668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17668_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 43906982 - 43907261
Alignment:
| Q |
20 |
aattaaagtacttaacaatggtgcaaaccatttagggatattagagattttgacattttaaacaatgtggactaacatcgataaatatcatgaaagcaac |
119 |
Q |
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| T |
43906982 |
aattaaagtacttaacaatggtgcaaaccatttagggatattagagattttgacattttaaacaatgtggactaacatcgataaatatcatgaaagcaac |
43907081 |
T |
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| Q |
120 |
ttaagctaacnnnnnnnn-ctttgtttagtggtggagtcctctaatgttcactttgtaacaaccacaaacaaaatgccatgtcctaaagaacaagctctt |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43907082 |
ttaagctaactttttttttctttgtttagtggtggagtcctctaatgttcactttgtaacaaccacaaacaaaatgccatgtcctaaagaacaagctctt |
43907181 |
T |
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| Q |
219 |
cttaaactcttcaacaatgtctcaacttctttgcagcttcttttcttagtcctattttccattgccatttttcttctcac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43907182 |
cttaaactcttcaacaatgtctcaacttctttgcagcttcttttcttagtcctattttccattgccatttttcttgtcac |
43907261 |
T |
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